miRNA display CGI


Results 101 - 120 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 127746 0.67 0.695103
Target:  5'- uGGCGGCG-GGagcggGCCG----CGGCGGg -3'
miRNA:   3'- -CCGCCGCgCCaa---CGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 98522 0.67 0.653102
Target:  5'- gGGCaGGCGCGaGauccgGCCGguagGCUgcgcccgcgaaaucCGGCGGg -3'
miRNA:   3'- -CCG-CCGCGC-Caa---CGGCa---UGA--------------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 15369 0.67 0.685393
Target:  5'- cGGCGGCGCucGgcGCC---CUCGGCGc -3'
miRNA:   3'- -CCGCCGCGc-CaaCGGcauGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 130472 0.68 0.636385
Target:  5'- aGCGGCucGCGGcgUGCC----UCGGCGGc -3'
miRNA:   3'- cCGCCG--CGCCa-ACGGcaugAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 15181 0.68 0.646222
Target:  5'- cGGCGGCgcccGCGGgaaacGCCGccaUCGcGCGGu -3'
miRNA:   3'- -CCGCCG----CGCCaa---CGGCaugAGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 32076 0.68 0.646222
Target:  5'- cGCGGCGCuggggcucgGGgaGCCGgACUUcGCGGa -3'
miRNA:   3'- cCGCCGCG---------CCaaCGGCaUGAGcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 53035 0.68 0.646222
Target:  5'- cGCGGCGcCGGggcaGCCGUcgggagggcaguGCUCcaccccggGGCGGc -3'
miRNA:   3'- cCGCCGC-GCCaa--CGGCA------------UGAG--------CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 82870 0.68 0.646222
Target:  5'- aGGCGGCGaCGGc-GCUGg---CGGUGGc -3'
miRNA:   3'- -CCGCCGC-GCCaaCGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 99447 0.68 0.646222
Target:  5'- gGGCGgaagaGCGCGG--GCCG-ACccgCGGCGGc -3'
miRNA:   3'- -CCGC-----CGCGCCaaCGGCaUGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 83618 0.68 0.647205
Target:  5'- cGCGGCGUGGUccagcgcgagguccaGCgCGUACgucagCGGCGu -3'
miRNA:   3'- cCGCCGCGCCAa--------------CG-GCAUGa----GCCGCc -5'
23744 5' -60.3 NC_005261.1 + 87473 0.68 0.645238
Target:  5'- aGGCGcGCGUcaGGUUcggcgcgGCCGUGCU-GGCGc -3'
miRNA:   3'- -CCGC-CGCG--CCAA-------CGGCAUGAgCCGCc -5'
23744 5' -60.3 NC_005261.1 + 109327 0.68 0.616709
Target:  5'- cGCGaGCGCGGccGCgGgg-UCGGCGGc -3'
miRNA:   3'- cCGC-CGCGCCaaCGgCaugAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 131722 0.68 0.636385
Target:  5'- aGGCGGCGCgcuucGGUgggUGCUGcACgCGGaCGGc -3'
miRNA:   3'- -CCGCCGCG-----CCA---ACGGCaUGaGCC-GCC- -5'
23744 5' -60.3 NC_005261.1 + 15005 0.68 0.636385
Target:  5'- cGGa-GCGCGGgagGaggaGUugUCGGCGGg -3'
miRNA:   3'- -CCgcCGCGCCaa-Cgg--CAugAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 1694 0.68 0.616709
Target:  5'- cGCGGCagcacGCGc-UGCCgGUACUCGcGCGGc -3'
miRNA:   3'- cCGCCG-----CGCcaACGG-CAUGAGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 32549 0.68 0.616709
Target:  5'- cGCGGCGCGG--GCCG-GCgCGcGUGGa -3'
miRNA:   3'- cCGCCGCGCCaaCGGCaUGaGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 519 0.68 0.626545
Target:  5'- gGGagGGCGCGGgcggGCgGgggGCagGGCGGa -3'
miRNA:   3'- -CCg-CCGCGCCaa--CGgCa--UGagCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 98393 0.68 0.626545
Target:  5'- -cCGGCGUGGggGCgGgcgcggACUCuGGUGGg -3'
miRNA:   3'- ccGCCGCGCCaaCGgCa-----UGAG-CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 81349 0.68 0.633433
Target:  5'- cGGCGGgGCGGgggcuugcggggggcGCCGgGCUCGcUGGg -3'
miRNA:   3'- -CCGCCgCGCCaa-------------CGGCaUGAGCcGCC- -5'
23744 5' -60.3 NC_005261.1 + 58079 0.68 0.636385
Target:  5'- cGGCGGCGCcaggGCCcgcGUcCUCgGGCGGc -3'
miRNA:   3'- -CCGCCGCGccaaCGG---CAuGAG-CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.