miRNA display CGI


Results 21 - 40 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 67065 0.75 0.255888
Target:  5'- gGGCGcGCGCGGggGCUc-GCUCgGGCGGu -3'
miRNA:   3'- -CCGC-CGCGCCaaCGGcaUGAG-CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 98453 0.75 0.260033
Target:  5'- aGGCGGCGCccgcaaaauccgacGGgcgGCCGUccuccgcggGCUCGGgCGGg -3'
miRNA:   3'- -CCGCCGCG--------------CCaa-CGGCA---------UGAGCC-GCC- -5'
23744 5' -60.3 NC_005261.1 + 261 0.75 0.261827
Target:  5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 297 0.75 0.261827
Target:  5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 137944 0.75 0.261827
Target:  5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 45617 0.74 0.306559
Target:  5'- cGGCGGCGCGGc-GCgGcg--CGGCGGg -3'
miRNA:   3'- -CCGCCGCGCCaaCGgCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 59482 0.74 0.313408
Target:  5'- cGcCGGCGCGGccGCCGcGCcagCGGCGGc -3'
miRNA:   3'- cC-GCCGCGCCaaCGGCaUGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 98048 0.74 0.313408
Target:  5'- uGGCGGcCGCGGgcgGCgGgaccGCgggCGGCGGg -3'
miRNA:   3'- -CCGCC-GCGCCaa-CGgCa---UGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 75481 0.74 0.320371
Target:  5'- cGGCGGCGCGG--GCCGcUACgagcGCGGg -3'
miRNA:   3'- -CCGCCGCGCCaaCGGC-AUGagc-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 131196 0.74 0.320371
Target:  5'- cGCGGCGCGGUcGCCGc---CGGCGc -3'
miRNA:   3'- cCGCCGCGCCAaCGGCaugaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 98201 0.74 0.32745
Target:  5'- cGGCGGgcaGCGGgcGCCGccacgGCagcgCGGCGGg -3'
miRNA:   3'- -CCGCCg--CGCCaaCGGCa----UGa---GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 101441 0.74 0.306559
Target:  5'- aGGCGGCGCGGUccagcGCUGgccccaGCgccgcCGGCGGc -3'
miRNA:   3'- -CCGCCGCGCCAa----CGGCa-----UGa----GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 74945 0.74 0.306559
Target:  5'- uGCGGCGCGGgcGC---GCUCGGCGc -3'
miRNA:   3'- cCGCCGCGCCaaCGgcaUGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 23595 0.74 0.302506
Target:  5'- cGGCGGUgGUGGUggcugucgccgccgcUGCCGggGCgCGGCGGg -3'
miRNA:   3'- -CCGCCG-CGCCA---------------ACGGCa-UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 35693 0.74 0.299826
Target:  5'- cGGCGaGCccCGGUggGCCGgggGCUCGGUGGc -3'
miRNA:   3'- -CCGC-CGc-GCCAa-CGGCa--UGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 29811 0.74 0.299826
Target:  5'- cGGCGGCGCGGgcgcccgcGCCGcGCUCGcCGa -3'
miRNA:   3'- -CCGCCGCGCCaa------CGGCaUGAGCcGCc -5'
23744 5' -60.3 NC_005261.1 + 17169 0.74 0.293208
Target:  5'- cGCGGCGCGGgcgugggcaGCCcUGCcgCGGCGGc -3'
miRNA:   3'- cCGCCGCGCCaa-------CGGcAUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 118550 0.74 0.293208
Target:  5'- cGGCGcGCGCGaGgacGCCGUGCccgcgcgcgCGGCGGc -3'
miRNA:   3'- -CCGC-CGCGC-Caa-CGGCAUGa--------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 11927 0.74 0.293208
Target:  5'- cGGCGGCuGCGGcgGcCCGcGCcgCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaC-GGCaUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 97540 0.74 0.292553
Target:  5'- cGGCGGCcccgGCGGUgccgGcCCGUccgcccgggguugGCUCGGUGGc -3'
miRNA:   3'- -CCGCCG----CGCCAa---C-GGCA-------------UGAGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.