miRNA display CGI


Results 41 - 60 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 122334 0.73 0.375464
Target:  5'- aGGUGGCGCucgcagagcucgccuGGcgGCCGcgGCUCGcGCGGc -3'
miRNA:   3'- -CCGCCGCG---------------CCaaCGGCa-UGAGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 135056 0.73 0.372328
Target:  5'- cGGCGGCaGCGGcccGCCGcuuuccggCGGCGGg -3'
miRNA:   3'- -CCGCCG-CGCCaa-CGGCauga----GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 11483 0.73 0.372328
Target:  5'- gGGCGGgGCGGgggUGCCG-GCUCgaGGCu- -3'
miRNA:   3'- -CCGCCgCGCCa--ACGGCaUGAG--CCGcc -5'
23744 5' -60.3 NC_005261.1 + 97390 0.73 0.364564
Target:  5'- cGCGGCuuucGCGccUGCCGcggGCUUGGCGGg -3'
miRNA:   3'- cCGCCG----CGCcaACGGCa--UGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 81428 0.73 0.364564
Target:  5'- aGGCGGCGUcGUcgGCCGccccgCGGCGGg -3'
miRNA:   3'- -CCGCCGCGcCAa-CGGCauga-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 56140 0.73 0.364564
Target:  5'- gGGgGGCGCGG--GCCGagggugGCggcagCGGCGGg -3'
miRNA:   3'- -CCgCCGCGCCaaCGGCa-----UGa----GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 22109 0.73 0.364564
Target:  5'- gGGCGGUguGCGGagagugcgUGCgGUAUaCGGCGGg -3'
miRNA:   3'- -CCGCCG--CGCCa-------ACGgCAUGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 16410 0.73 0.341952
Target:  5'- gGGCGGUGCGGgagagGCCcccucgacgGCgggCGGCGGc -3'
miRNA:   3'- -CCGCCGCGCCaa---CGGca-------UGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 69511 0.73 0.341952
Target:  5'- cGGCGGCG-GGcUGCCGgaGCUgGcGCGGg -3'
miRNA:   3'- -CCGCCGCgCCaACGGCa-UGAgC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 121394 0.73 0.344167
Target:  5'- cGGCGGCGCcugcccgagugcgacGGcUGCCGccgccgcUACggggCGGCGGg -3'
miRNA:   3'- -CCGCCGCG---------------CCaACGGC-------AUGa---GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 31649 0.73 0.344908
Target:  5'- cGCGGCGCGGUcgaguaccucUGCC-UGCggcuggccgcggcgCGGCGGc -3'
miRNA:   3'- cCGCCGCGCCA----------ACGGcAUGa-------------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 1596 0.73 0.349376
Target:  5'- uGGCGGCGCGGUggcugGCCGc-CUCGcccuccGCGa -3'
miRNA:   3'- -CCGCCGCGCCAa----CGGCauGAGC------CGCc -5'
23744 5' -60.3 NC_005261.1 + 134566 0.72 0.388189
Target:  5'- gGGCGGCGCcGcgGCUGcGCagGGCGGg -3'
miRNA:   3'- -CCGCCGCGcCaaCGGCaUGagCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 125704 0.72 0.388189
Target:  5'- uGGCccGGCGaCGGccGCCGcggGCUCGGCuGGg -3'
miRNA:   3'- -CCG--CCGC-GCCaaCGGCa--UGAGCCG-CC- -5'
23744 5' -60.3 NC_005261.1 + 98004 0.72 0.388189
Target:  5'- aGGCGGCGgGGgcGCUGg---CGGCGa -3'
miRNA:   3'- -CCGCCGCgCCaaCGGCaugaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 138044 0.72 0.380203
Target:  5'- cGGUGGCgGCGGUgGCgGcgGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCAaCGgCa-UGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 29420 0.72 0.380203
Target:  5'- cGGCGGcCGCGGggcccgcgGCCGUGUUCGuGcCGGa -3'
miRNA:   3'- -CCGCC-GCGCCaa------CGGCAUGAGC-C-GCC- -5'
23744 5' -60.3 NC_005261.1 + 373 0.72 0.380203
Target:  5'- cGGUGGCgGCGGUgGCgGcgGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCAaCGgCa-UGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 83300 0.72 0.380203
Target:  5'- cGGCuGCGCGGg-GUCGUgcaGCUCgGGCGGc -3'
miRNA:   3'- -CCGcCGCGCCaaCGGCA---UGAG-CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 118169 0.72 0.388189
Target:  5'- cGCGGCGgGGcUUGCCGU-CUgGGCcgcGGg -3'
miRNA:   3'- cCGCCGCgCC-AACGGCAuGAgCCG---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.