miRNA display CGI


Results 61 - 80 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 1062 0.72 0.421211
Target:  5'- aGCGGCGCGGgggGCUGgccccGCUCcagGGCGa -3'
miRNA:   3'- cCGCCGCGCCaa-CGGCa----UGAG---CCGCc -5'
23744 5' -60.3 NC_005261.1 + 104121 0.72 0.421211
Target:  5'- aGCcGCGCGGUUcGCCGcgaGCUCGGCc- -3'
miRNA:   3'- cCGcCGCGCCAA-CGGCa--UGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 44015 0.72 0.421211
Target:  5'- cGGCuucGGCGCGGcgggcgGCCGccGCgCGGCGGc -3'
miRNA:   3'- -CCG---CCGCGCCaa----CGGCa-UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 86559 0.72 0.421211
Target:  5'- gGGCGGCgauuugguagaaGCGGUggaaGCCGg---CGGCGGc -3'
miRNA:   3'- -CCGCCG------------CGCCAa---CGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 134711 0.72 0.402838
Target:  5'- cGCGGCGCGcccagacccgGCCGggacccggACUCGGCGa -3'
miRNA:   3'- cCGCCGCGCcaa-------CGGCa-------UGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 68996 0.72 0.399553
Target:  5'- gGGCcGCGCGGgcGCCGcgGCUucguuggcgaguccgUGGCGGa -3'
miRNA:   3'- -CCGcCGCGCCaaCGGCa-UGA---------------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 74874 0.72 0.380203
Target:  5'- aGGCGGaCGCGGcgGCgGcgGCggagUCGGCGGc -3'
miRNA:   3'- -CCGCC-GCGCCaaCGgCa-UG----AGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 83300 0.72 0.380203
Target:  5'- cGGCuGCGCGGg-GUCGUgcaGCUCgGGCGGc -3'
miRNA:   3'- -CCGcCGCGCCaaCGGCA---UGAG-CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 373 0.72 0.380203
Target:  5'- cGGUGGCgGCGGUgGCgGcgGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCAaCGgCa-UGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 29420 0.72 0.380203
Target:  5'- cGGCGGcCGCGGggcccgcgGCCGUGUUCGuGcCGGa -3'
miRNA:   3'- -CCGCC-GCGCCaa------CGGCAUGAGC-C-GCC- -5'
23744 5' -60.3 NC_005261.1 + 138044 0.72 0.380203
Target:  5'- cGGUGGCgGCGGUgGCgGcgGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCAaCGgCa-UGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 98004 0.72 0.388189
Target:  5'- aGGCGGCGgGGgcGCUGg---CGGCGa -3'
miRNA:   3'- -CCGCCGCgCCaaCGGCaugaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 125704 0.72 0.388189
Target:  5'- uGGCccGGCGaCGGccGCCGcggGCUCGGCuGGg -3'
miRNA:   3'- -CCG--CCGC-GCCaaCGGCa--UGAGCCG-CC- -5'
23744 5' -60.3 NC_005261.1 + 134566 0.72 0.388189
Target:  5'- gGGCGGCGCcGcgGCUGcGCagGGCGGg -3'
miRNA:   3'- -CCGCCGCGcCaaCGGCaUGagCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 118169 0.72 0.388189
Target:  5'- cGCGGCGgGGcUUGCCGU-CUgGGCcgcGGg -3'
miRNA:   3'- cCGCCGCgCC-AACGGCAuGAgCCG---CC- -5'
23744 5' -60.3 NC_005261.1 + 96454 0.72 0.396284
Target:  5'- aGCGGCGgGGUacagaagGCCGcGCUCcGCGGc -3'
miRNA:   3'- cCGCCGCgCCAa------CGGCaUGAGcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 18786 0.72 0.396284
Target:  5'- aGCGGCGaGGgUGCCGgcuugaGCggCGGCGGg -3'
miRNA:   3'- cCGCCGCgCCaACGGCa-----UGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 98756 0.72 0.396284
Target:  5'- uGGCcGCGCGGUUGCCGcUGCcgccgcCGGCc- -3'
miRNA:   3'- -CCGcCGCGCCAACGGC-AUGa-----GCCGcc -5'
23744 5' -60.3 NC_005261.1 + 127673 0.71 0.429728
Target:  5'- gGGCGGgacgGCGGcgGCCGcUGCccCGGCGGc -3'
miRNA:   3'- -CCGCCg---CGCCaaCGGC-AUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 32023 0.71 0.438346
Target:  5'- cGGCaGCGCGuGcUGCCGcgGCUCGaCGGg -3'
miRNA:   3'- -CCGcCGCGC-CaACGGCa-UGAGCcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.