Results 81 - 100 of 310 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23744 | 5' | -60.3 | NC_005261.1 | + | 12640 | 0.71 | 0.473769 |
Target: 5'- -cCGGCGCGGUcugggGCCGcGC-CGGCGc -3' miRNA: 3'- ccGCCGCGCCAa----CGGCaUGaGCCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 43851 | 0.71 | 0.473769 |
Target: 5'- gGGCgaGGaCGCGGccgcGUCGUcCUCGGCGGc -3' miRNA: 3'- -CCG--CC-GCGCCaa--CGGCAuGAGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 13122 | 0.71 | 0.473769 |
Target: 5'- cGGCGGcCGCGGggcGCgUGUGgUCGGUGa -3' miRNA: 3'- -CCGCC-GCGCCaa-CG-GCAUgAGCCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 86061 | 0.71 | 0.473769 |
Target: 5'- cGGCGGCGCGGUacgugGCCugcaugaUGCUCcGCGc -3' miRNA: 3'- -CCGCCGCGCCAa----CGGc------AUGAGcCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 121650 | 0.71 | 0.473769 |
Target: 5'- cGGCGaGCGCGG--GCUGUccGCgUCGGCGu -3' miRNA: 3'- -CCGC-CGCGCCaaCGGCA--UG-AGCCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 132365 | 0.71 | 0.473769 |
Target: 5'- cGCGGCGCGcucGCCGcGCUC-GCGGc -3' miRNA: 3'- cCGCCGCGCcaaCGGCaUGAGcCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 86908 | 0.71 | 0.47739 |
Target: 5'- cGCGGCGCGGacccgcguccaccGCCGccgccGCgcgCGGCGGg -3' miRNA: 3'- cCGCCGCGCCaa-----------CGGCa----UGa--GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 118639 | 0.71 | 0.456758 |
Target: 5'- cGGCGGCGCucuGGgccccggGCCGcGCgcucggggcugagggCGGCGGg -3' miRNA: 3'- -CCGCCGCG---CCaa-----CGGCaUGa--------------GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 136614 | 0.71 | 0.455872 |
Target: 5'- aGCGGCGCGcGcgcGCCGagggCGGCGGg -3' miRNA: 3'- cCGCCGCGC-Caa-CGGCaugaGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 33747 | 0.71 | 0.455872 |
Target: 5'- cGCGGCGCcGggGCCGggcccGCUC-GCGGg -3' miRNA: 3'- cCGCCGCGcCaaCGGCa----UGAGcCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 41068 | 0.71 | 0.427163 |
Target: 5'- cGGCGGCGCGGUccGCCGccagcccccgccagUcgaccGCgucguccgCGGCGGg -3' miRNA: 3'- -CCGCCGCGCCAa-CGGC--------------A-----UGa-------GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 127673 | 0.71 | 0.429728 |
Target: 5'- gGGCGGgacgGCGGcgGCCGcUGCccCGGCGGc -3' miRNA: 3'- -CCGCCg---CGCCaaCGGC-AUGa-GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 32023 | 0.71 | 0.438346 |
Target: 5'- cGGCaGCGCGuGcUGCCGcgGCUCGaCGGg -3' miRNA: 3'- -CCGcCGCGC-CaACGGCa-UGAGCcGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 69769 | 0.71 | 0.438346 |
Target: 5'- gGGCGGCGcCGGggacugaGCCGcucccgcgGCgcgCGGCGGc -3' miRNA: 3'- -CCGCCGC-GCCaa-----CGGCa-------UGa--GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 98354 | 0.71 | 0.438346 |
Target: 5'- cGGgGGCGgGGguggGCgCGgGCUCuGGCGGg -3' miRNA: 3'- -CCgCCGCgCCaa--CG-GCaUGAG-CCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 13251 | 0.71 | 0.444436 |
Target: 5'- aGGcCGGCGCgccgucaaagacuaGGUccacGCUGUugUUGGCGGg -3' miRNA: 3'- -CC-GCCGCG--------------CCAa---CGGCAugAGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 64495 | 0.71 | 0.447061 |
Target: 5'- gGGUGGCGCGGgUGCuCGggGCccgCgGGCGGc -3' miRNA: 3'- -CCGCCGCGCCaACG-GCa-UGa--G-CCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 16173 | 0.71 | 0.455872 |
Target: 5'- aGGgGGCGCGGgcgUGgCGggGgUgGGCGGg -3' miRNA: 3'- -CCgCCGCGCCa--ACgGCa-UgAgCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 97744 | 0.71 | 0.455872 |
Target: 5'- uGGCaGGgGCGGg-GCgG-GCUCGGCGGc -3' miRNA: 3'- -CCG-CCgCGCCaaCGgCaUGAGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 102957 | 0.7 | 0.482849 |
Target: 5'- cGGCGGcCGCGGgcGCCGcggGCUCcGCc- -3' miRNA: 3'- -CCGCC-GCGCCaaCGGCa--UGAGcCGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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