Results 61 - 80 of 310 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23744 | 5' | -60.3 | NC_005261.1 | + | 98004 | 0.72 | 0.388189 |
Target: 5'- aGGCGGCGgGGgcGCUGg---CGGCGa -3' miRNA: 3'- -CCGCCGCgCCaaCGGCaugaGCCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 98756 | 0.72 | 0.396284 |
Target: 5'- uGGCcGCGCGGUUGCCGcUGCcgccgcCGGCc- -3' miRNA: 3'- -CCGcCGCGCCAACGGC-AUGa-----GCCGcc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 18786 | 0.72 | 0.396284 |
Target: 5'- aGCGGCGaGGgUGCCGgcuugaGCggCGGCGGg -3' miRNA: 3'- cCGCCGCgCCaACGGCa-----UGa-GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 96454 | 0.72 | 0.396284 |
Target: 5'- aGCGGCGgGGUacagaagGCCGcGCUCcGCGGc -3' miRNA: 3'- cCGCCGCgCCAa------CGGCaUGAGcCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 68996 | 0.72 | 0.399553 |
Target: 5'- gGGCcGCGCGGgcGCCGcgGCUucguuggcgaguccgUGGCGGa -3' miRNA: 3'- -CCGcCGCGCCaaCGGCa-UGA---------------GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 134711 | 0.72 | 0.402838 |
Target: 5'- cGCGGCGCGcccagacccgGCCGggacccggACUCGGCGa -3' miRNA: 3'- cCGCCGCGCcaa-------CGGCa-------UGAGCCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 61572 | 0.72 | 0.404487 |
Target: 5'- uGGUGGCGCuGGUgaugGCCGUGUUC-GUGGg -3' miRNA: 3'- -CCGCCGCG-CCAa---CGGCAUGAGcCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 114350 | 0.72 | 0.404487 |
Target: 5'- aGCGGCGCGuGgccgcgGCCG-AgUCGGUGGc -3' miRNA: 3'- cCGCCGCGC-Caa----CGGCaUgAGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 98141 | 0.72 | 0.404487 |
Target: 5'- cGGCGGCcgucgGCGGcaagGCCGcgggCGGCGGg -3' miRNA: 3'- -CCGCCG-----CGCCaa--CGGCaugaGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 88827 | 0.72 | 0.412797 |
Target: 5'- cGGCGGCGCGc--GCCGgcC-CGGCGu -3' miRNA: 3'- -CCGCCGCGCcaaCGGCauGaGCCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 67882 | 0.72 | 0.412797 |
Target: 5'- gGGCGGCGCGGguaagcGCCGcauuuaACcCGGCGc -3' miRNA: 3'- -CCGCCGCGCCaa----CGGCa-----UGaGCCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 67105 | 0.72 | 0.412797 |
Target: 5'- cGCGGUGCGGgcgGCgCGcGCagugCGGCGGc -3' miRNA: 3'- cCGCCGCGCCaa-CG-GCaUGa---GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 21785 | 0.72 | 0.412797 |
Target: 5'- cGCGGCGCGGgccGCCGcagccGC-CGGcCGGg -3' miRNA: 3'- cCGCCGCGCCaa-CGGCa----UGaGCC-GCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 111085 | 0.72 | 0.412797 |
Target: 5'- gGGCcuGGUGUGGgggGCCGgggACUgGGUGGa -3' miRNA: 3'- -CCG--CCGCGCCaa-CGGCa--UGAgCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 1062 | 0.72 | 0.421211 |
Target: 5'- aGCGGCGCGGgggGCUGgccccGCUCcagGGCGa -3' miRNA: 3'- cCGCCGCGCCaa-CGGCa----UGAG---CCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 104121 | 0.72 | 0.421211 |
Target: 5'- aGCcGCGCGGUUcGCCGcgaGCUCGGCc- -3' miRNA: 3'- cCGcCGCGCCAA-CGGCa--UGAGCCGcc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 44015 | 0.72 | 0.421211 |
Target: 5'- cGGCuucGGCGCGGcgggcgGCCGccGCgCGGCGGc -3' miRNA: 3'- -CCG---CCGCGCCaa----CGGCa-UGaGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 86559 | 0.72 | 0.421211 |
Target: 5'- gGGCGGCgauuugguagaaGCGGUggaaGCCGg---CGGCGGc -3' miRNA: 3'- -CCGCCG------------CGCCAa---CGGCaugaGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 41068 | 0.71 | 0.427163 |
Target: 5'- cGGCGGCGCGGUccGCCGccagcccccgccagUcgaccGCgucguccgCGGCGGg -3' miRNA: 3'- -CCGCCGCGCCAa-CGGC--------------A-----UGa-------GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 127673 | 0.71 | 0.429728 |
Target: 5'- gGGCGGgacgGCGGcgGCCGcUGCccCGGCGGc -3' miRNA: 3'- -CCGCCg---CGCCaaCGGC-AUGa-GCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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