miRNA display CGI


Results 81 - 100 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 98354 0.71 0.438346
Target:  5'- cGGgGGCGgGGguggGCgCGgGCUCuGGCGGg -3'
miRNA:   3'- -CCgCCGCgCCaa--CG-GCaUGAG-CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 69769 0.71 0.438346
Target:  5'- gGGCGGCGcCGGggacugaGCCGcucccgcgGCgcgCGGCGGc -3'
miRNA:   3'- -CCGCCGC-GCCaa-----CGGCa-------UGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 32023 0.71 0.438346
Target:  5'- cGGCaGCGCGuGcUGCCGcgGCUCGaCGGg -3'
miRNA:   3'- -CCGcCGCGC-CaACGGCa-UGAGCcGCC- -5'
23744 5' -60.3 NC_005261.1 + 13251 0.71 0.444436
Target:  5'- aGGcCGGCGCgccgucaaagacuaGGUccacGCUGUugUUGGCGGg -3'
miRNA:   3'- -CC-GCCGCG--------------CCAa---CGGCAugAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 64495 0.71 0.447061
Target:  5'- gGGUGGCGCGGgUGCuCGggGCccgCgGGCGGc -3'
miRNA:   3'- -CCGCCGCGCCaACG-GCa-UGa--G-CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 136614 0.71 0.455872
Target:  5'- aGCGGCGCGcGcgcGCCGagggCGGCGGg -3'
miRNA:   3'- cCGCCGCGC-Caa-CGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 33747 0.71 0.455872
Target:  5'- cGCGGCGCcGggGCCGggcccGCUC-GCGGg -3'
miRNA:   3'- cCGCCGCGcCaaCGGCa----UGAGcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 97744 0.71 0.455872
Target:  5'- uGGCaGGgGCGGg-GCgG-GCUCGGCGGc -3'
miRNA:   3'- -CCG-CCgCGCCaaCGgCaUGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 16173 0.71 0.455872
Target:  5'- aGGgGGCGCGGgcgUGgCGggGgUgGGCGGg -3'
miRNA:   3'- -CCgCCGCGCCa--ACgGCa-UgAgCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 118639 0.71 0.456758
Target:  5'- cGGCGGCGCucuGGgccccggGCCGcGCgcucggggcugagggCGGCGGg -3'
miRNA:   3'- -CCGCCGCG---CCaa-----CGGCaUGa--------------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 30223 0.71 0.459422
Target:  5'- uGGCGGCGCGaaccguggccccgcuGgcGCgGUACUCGacgcGCGGc -3'
miRNA:   3'- -CCGCCGCGC---------------CaaCGgCAUGAGC----CGCC- -5'
23744 5' -60.3 NC_005261.1 + 73160 0.71 0.464776
Target:  5'- aGGCGGCGuuGUUGCUcgGC-CGGgGGg -3'
miRNA:   3'- -CCGCCGCgcCAACGGcaUGaGCCgCC- -5'
23744 5' -60.3 NC_005261.1 + 132365 0.71 0.473769
Target:  5'- cGCGGCGCGcucGCCGcGCUC-GCGGc -3'
miRNA:   3'- cCGCCGCGCcaaCGGCaUGAGcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 121650 0.71 0.473769
Target:  5'- cGGCGaGCGCGG--GCUGUccGCgUCGGCGu -3'
miRNA:   3'- -CCGC-CGCGCCaaCGGCA--UG-AGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 86061 0.71 0.473769
Target:  5'- cGGCGGCGCGGUacgugGCCugcaugaUGCUCcGCGc -3'
miRNA:   3'- -CCGCCGCGCCAa----CGGc------AUGAGcCGCc -5'
23744 5' -60.3 NC_005261.1 + 13122 0.71 0.473769
Target:  5'- cGGCGGcCGCGGggcGCgUGUGgUCGGUGa -3'
miRNA:   3'- -CCGCC-GCGCCaa-CG-GCAUgAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 43851 0.71 0.473769
Target:  5'- gGGCgaGGaCGCGGccgcGUCGUcCUCGGCGGc -3'
miRNA:   3'- -CCG--CC-GCGCCaa--CGGCAuGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 12640 0.71 0.473769
Target:  5'- -cCGGCGCGGUcugggGCCGcGC-CGGCGc -3'
miRNA:   3'- ccGCCGCGCCAa----CGGCaUGaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 86908 0.71 0.47739
Target:  5'- cGCGGCGCGGacccgcguccaccGCCGccgccGCgcgCGGCGGg -3'
miRNA:   3'- cCGCCGCGCCaa-----------CGGCa----UGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 102957 0.7 0.482849
Target:  5'- cGGCGGcCGCGGgcGCCGcggGCUCcGCc- -3'
miRNA:   3'- -CCGCC-GCGCCaaCGGCa--UGAGcCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.