miRNA display CGI


Results 61 - 80 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 59737 0.66 0.714369
Target:  5'- cGGCGGCGCGcg-GCCGccCUCcaccaGGCaGGc -3'
miRNA:   3'- -CCGCCGCGCcaaCGGCauGAG-----CCG-CC- -5'
23744 5' -60.3 NC_005261.1 + 89944 0.66 0.714369
Target:  5'- cGGUGGCGCGGcugGCCGggaucacagUGC-CGcGCGc -3'
miRNA:   3'- -CCGCCGCGCCaa-CGGC---------AUGaGC-CGCc -5'
23744 5' -60.3 NC_005261.1 + 60930 0.66 0.714369
Target:  5'- cGGCGGCgacccGCGG--GCCGUgGCcCGaGCGGc -3'
miRNA:   3'- -CCGCCG-----CGCCaaCGGCA-UGaGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 97459 0.66 0.714369
Target:  5'- cGGCGGCGcCGGgaucGCCaaaACcgUCGGgGGg -3'
miRNA:   3'- -CCGCCGC-GCCaa--CGGca-UG--AGCCgCC- -5'
23744 5' -60.3 NC_005261.1 + 5122 0.66 0.711494
Target:  5'- -uCGGCGCGGgcggcccGCCGgcGCUCgcgcgccucggcccGGCGGg -3'
miRNA:   3'- ccGCCGCGCCaa-----CGGCa-UGAG--------------CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 100815 0.66 0.711494
Target:  5'- gGGCGcGUGCGccugcgccgcccagGCCGggaGCUCGGCGa -3'
miRNA:   3'- -CCGC-CGCGCcaa-----------CGGCa--UGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 32188 0.66 0.710535
Target:  5'- gGGCGGCGCGcgcuggagcuGgcgcccgacgagcUGCCGgcCgCGGCGGu -3'
miRNA:   3'- -CCGCCGCGC----------Ca------------ACGGCauGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 127367 0.67 0.704764
Target:  5'- cGUGGCuaGGaUGUCGUuggCGGCGGc -3'
miRNA:   3'- cCGCCGcgCCaACGGCAugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 31603 0.67 0.704764
Target:  5'- cGGC-GCGCaGGgcgUGCUGcUGCUCGcgacGCGGg -3'
miRNA:   3'- -CCGcCGCG-CCa--ACGGC-AUGAGC----CGCC- -5'
23744 5' -60.3 NC_005261.1 + 123692 0.67 0.704764
Target:  5'- cGGCGcucaGCGUGG--GCCGcgUACUCGGCc- -3'
miRNA:   3'- -CCGC----CGCGCCaaCGGC--AUGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 79827 0.67 0.704764
Target:  5'- cGGCGGCGCGGcgGCCa-GCgCaGCGc -3'
miRNA:   3'- -CCGCCGCGCCaaCGGcaUGaGcCGCc -5'
23744 5' -60.3 NC_005261.1 + 48457 0.67 0.704764
Target:  5'- cGGcCGGCGCGGUcaacGCCGgccgaguccaGCagGGCGa -3'
miRNA:   3'- -CC-GCCGCGCCAa---CGGCa---------UGagCCGCc -5'
23744 5' -60.3 NC_005261.1 + 39341 0.67 0.703801
Target:  5'- cGCGGCcaagcugcgcgcgGCGGcaGCCGccucaUCGGCGGc -3'
miRNA:   3'- cCGCCG-------------CGCCaaCGGCaug--AGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 90748 0.67 0.700906
Target:  5'- aGGCgcuGGCGCGGgacuuccccgagGCCGccgaggccGCUgCGGCGGc -3'
miRNA:   3'- -CCG---CCGCGCCaa----------CGGCa-------UGA-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 107694 0.67 0.695103
Target:  5'- cGCGGCGgGGgcGCCGccgaacgucgcUGCcgCGGCaGGc -3'
miRNA:   3'- cCGCCGCgCCaaCGGC-----------AUGa-GCCG-CC- -5'
23744 5' -60.3 NC_005261.1 + 81506 0.67 0.695103
Target:  5'- cGCGGCGCGcgcGCCGccGC-CGGCGc -3'
miRNA:   3'- cCGCCGCGCcaaCGGCa-UGaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 64111 0.67 0.695103
Target:  5'- uGCGGCaCGGgcgGCaCGUGC-CGcGCGGc -3'
miRNA:   3'- cCGCCGcGCCaa-CG-GCAUGaGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 1804 0.67 0.695103
Target:  5'- cGGCGGCGCcccggGGUagaGCCGcGCguaagcggccUCGGCGc -3'
miRNA:   3'- -CCGCCGCG-----CCAa--CGGCaUG----------AGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 127746 0.67 0.695103
Target:  5'- uGGCGGCG-GGagcggGCCG----CGGCGGg -3'
miRNA:   3'- -CCGCCGCgCCaa---CGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 94186 0.67 0.686365
Target:  5'- cGUGGCGCGGUgcgcggccaggaagUGCCgGUccaucagguagacgaACUCgaaGGCGGc -3'
miRNA:   3'- cCGCCGCGCCA--------------ACGG-CA---------------UGAG---CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.