miRNA display CGI


Results 41 - 60 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 13343 0.7 0.492012
Target:  5'- cGCGGCcaGCGGUcGgCGgagGCUgGGCGGc -3'
miRNA:   3'- cCGCCG--CGCCAaCgGCa--UGAgCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 13675 0.68 0.606883
Target:  5'- gGGgGGCGCGGggcGCgCGgGCguggGGCGGg -3'
miRNA:   3'- -CCgCCGCGCCaa-CG-GCaUGag--CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 14535 0.66 0.714369
Target:  5'- cGGUGGCGCGGccGCC-----CGGCGa -3'
miRNA:   3'- -CCGCCGCGCCaaCGGcaugaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 15005 0.68 0.636385
Target:  5'- cGGa-GCGCGGgagGaggaGUugUCGGCGGg -3'
miRNA:   3'- -CCgcCGCGCCaa-Cgg--CAugAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 15041 0.67 0.675642
Target:  5'- gGGCGuaGCGGgggggGUCGgggucgCGGCGGg -3'
miRNA:   3'- -CCGCcgCGCCaa---CGGCauga--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 15181 0.68 0.646222
Target:  5'- cGGCGGCgcccGCGGgaaacGCCGccaUCGcGCGGu -3'
miRNA:   3'- -CCGCCG----CGCCaa---CGGCaugAGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 15369 0.67 0.685393
Target:  5'- cGGCGGCGCucGgcGCC---CUCGGCGc -3'
miRNA:   3'- -CCGCCGCGc-CaaCGGcauGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 16173 0.71 0.455872
Target:  5'- aGGgGGCGCGGgcgUGgCGggGgUgGGCGGg -3'
miRNA:   3'- -CCgCCGCGCCa--ACgGCa-UgAgCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 16410 0.73 0.341952
Target:  5'- gGGCGGUGCGGgagagGCCcccucgacgGCgggCGGCGGc -3'
miRNA:   3'- -CCGCCGCGCCaa---CGGca-------UGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 17169 0.74 0.293208
Target:  5'- cGCGGCGCGGgcgugggcaGCCcUGCcgCGGCGGc -3'
miRNA:   3'- cCGCCGCGCCaa-------CGGcAUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 17547 0.86 0.053325
Target:  5'- gGGCGGCGCGGgcccGCCGU--UCGGCGGu -3'
miRNA:   3'- -CCGCCGCGCCaa--CGGCAugAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 18786 0.72 0.396284
Target:  5'- aGCGGCGaGGgUGCCGgcuugaGCggCGGCGGg -3'
miRNA:   3'- cCGCCGCgCCaACGGCa-----UGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 19067 0.69 0.548513
Target:  5'- gGGCuGCGCGGcucucgGCgCGUGCUUGcGUGGc -3'
miRNA:   3'- -CCGcCGCGCCaa----CG-GCAUGAGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 20583 0.69 0.577537
Target:  5'- cGGCGGCGCGGgugGCC-UACgUCGacacaGCGc -3'
miRNA:   3'- -CCGCCGCGCCaa-CGGcAUG-AGC-----CGCc -5'
23744 5' -60.3 NC_005261.1 + 21198 0.66 0.733377
Target:  5'- cGCGGcCGCGGacGCUGgccccgGCcgcgaCGGCGGg -3'
miRNA:   3'- cCGCC-GCGCCaaCGGCa-----UGa----GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 21785 0.72 0.412797
Target:  5'- cGCGGCGCGGgccGCCGcagccGC-CGGcCGGg -3'
miRNA:   3'- cCGCCGCGCCaa-CGGCa----UGaGCC-GCC- -5'
23744 5' -60.3 NC_005261.1 + 21814 0.66 0.714369
Target:  5'- nGGCcgGGCccgcgGCGGgcGCgCGUGCg-GGCGGg -3'
miRNA:   3'- -CCG--CCG-----CGCCaaCG-GCAUGagCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 22109 0.73 0.364564
Target:  5'- gGGCGGUguGCGGagagugcgUGCgGUAUaCGGCGGg -3'
miRNA:   3'- -CCGCCG--CGCCa-------ACGgCAUGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 22670 0.66 0.723909
Target:  5'- gGGCGGCGCccgaGUgccGCCGggggacggGCcCGGCGa -3'
miRNA:   3'- -CCGCCGCGc---CAa--CGGCa-------UGaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 22777 0.67 0.674665
Target:  5'- gGGCGG-GCcccgcgagaagggGGUUGUCGcgGC-CGGCGGc -3'
miRNA:   3'- -CCGCCgCG-------------CCAACGGCa-UGaGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.