miRNA display CGI


Results 61 - 80 of 310 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 23016 0.66 0.752059
Target:  5'- aGGCGGCccGCGaacgccuUUGCCGggaggGgaCGGCGGc -3'
miRNA:   3'- -CCGCCG--CGCc------AACGGCa----UgaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 23595 0.74 0.302506
Target:  5'- cGGCGGUgGUGGUggcugucgccgccgcUGCCGggGCgCGGCGGg -3'
miRNA:   3'- -CCGCCG-CGCCA---------------ACGGCa-UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 24125 0.66 0.733377
Target:  5'- aGGCgGGgGUGGggGCUGggugggcgggGCUCaccuGGCGGg -3'
miRNA:   3'- -CCG-CCgCGCCaaCGGCa---------UGAG----CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 24372 0.7 0.492012
Target:  5'- cGGCGGUGCucccGGUggGCuCGUcggCGGCGGg -3'
miRNA:   3'- -CCGCCGCG----CCAa-CG-GCAugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 25284 0.76 0.250061
Target:  5'- aGGgGGCGCGGUcugugGCCGUGagcgucgUCGGgGGg -3'
miRNA:   3'- -CCgCCGCGCCAa----CGGCAUg------AGCCgCC- -5'
23744 5' -60.3 NC_005261.1 + 27453 0.68 0.597075
Target:  5'- uGGCGGCG-GGccGCCccGCggGGCGGg -3'
miRNA:   3'- -CCGCCGCgCCaaCGGcaUGagCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 28268 0.69 0.577537
Target:  5'- gGGgGGCGCuGUUGCCGccGCcgCGGCc- -3'
miRNA:   3'- -CCgCCGCGcCAACGGCa-UGa-GCCGcc -5'
23744 5' -60.3 NC_005261.1 + 28635 0.66 0.723909
Target:  5'- uGGUGGcCGCGGggGagagugaCGagGC-CGGCGGg -3'
miRNA:   3'- -CCGCC-GCGCCaaCg------GCa-UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 28783 0.78 0.166914
Target:  5'- cGCGGCGCGGgcGCuCGcgGCcgCGGCGGa -3'
miRNA:   3'- cCGCCGCGCCaaCG-GCa-UGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 28879 0.66 0.770351
Target:  5'- uGCGGCGCGGacGCCGccgccUGCgcccaacGCGGa -3'
miRNA:   3'- cCGCCGCGCCaaCGGC-----AUGagc----CGCC- -5'
23744 5' -60.3 NC_005261.1 + 29420 0.72 0.380203
Target:  5'- cGGCGGcCGCGGggcccgcgGCCGUGUUCGuGcCGGa -3'
miRNA:   3'- -CCGCC-GCGCCaa------CGGCAUGAGC-C-GCC- -5'
23744 5' -60.3 NC_005261.1 + 29811 0.74 0.299826
Target:  5'- cGGCGGCGCGGgcgcccgcGCCGcGCUCGcCGa -3'
miRNA:   3'- -CCGCCGCGCCaa------CGGCaUGAGCcGCc -5'
23744 5' -60.3 NC_005261.1 + 29971 0.76 0.22784
Target:  5'- aGGCGGCGCGGUgcgccGCCGgcgcguccgGCagCGGCGc -3'
miRNA:   3'- -CCGCCGCGCCAa----CGGCa--------UGa-GCCGCc -5'
23744 5' -60.3 NC_005261.1 + 30223 0.71 0.459422
Target:  5'- uGGCGGCGCGaaccguggccccgcuGgcGCgGUACUCGacgcGCGGc -3'
miRNA:   3'- -CCGCCGCGC---------------CaaCGgCAUGAGC----CGCC- -5'
23744 5' -60.3 NC_005261.1 + 30333 0.69 0.558142
Target:  5'- -cCGGCGCGGcuggcgGCCGcGCUC-GCGGc -3'
miRNA:   3'- ccGCCGCGCCaa----CGGCaUGAGcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 30790 0.67 0.656049
Target:  5'- cGGCGGUGgaGGUgcugggGCCGgaggaGCUgGGgGGg -3'
miRNA:   3'- -CCGCCGCg-CCAa-----CGGCa----UGAgCCgCC- -5'
23744 5' -60.3 NC_005261.1 + 31469 0.75 0.27404
Target:  5'- cGGCGGCcugaGUGGccGCCgGUGCgCGGCGGg -3'
miRNA:   3'- -CCGCCG----CGCCaaCGG-CAUGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 31603 0.67 0.704764
Target:  5'- cGGC-GCGCaGGgcgUGCUGcUGCUCGcgacGCGGg -3'
miRNA:   3'- -CCGcCGCG-CCa--ACGGC-AUGAGC----CGCC- -5'
23744 5' -60.3 NC_005261.1 + 31649 0.73 0.344908
Target:  5'- cGCGGCGCGGUcgaguaccucUGCC-UGCggcuggccgcggcgCGGCGGc -3'
miRNA:   3'- cCGCCGCGCCA----------ACGGcAUGa-------------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 31826 0.68 0.615725
Target:  5'- cGGCGcGCGCuGGcgcgcGCCGUGCUggccucgCGGCGc -3'
miRNA:   3'- -CCGC-CGCG-CCaa---CGGCAUGA-------GCCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.