miRNA display CGI


Results 81 - 100 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 32023 0.71 0.438346
Target:  5'- cGGCaGCGCGuGcUGCCGcgGCUCGaCGGg -3'
miRNA:   3'- -CCGcCGCGC-CaACGGCa-UGAGCcGCC- -5'
23744 5' -60.3 NC_005261.1 + 32076 0.68 0.646222
Target:  5'- cGCGGCGCuggggcucgGGgaGCCGgACUUcGCGGa -3'
miRNA:   3'- cCGCCGCG---------CCaaCGGCaUGAGcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 32188 0.66 0.710535
Target:  5'- gGGCGGCGCGcgcuggagcuGgcgcccgacgagcUGCCGgcCgCGGCGGu -3'
miRNA:   3'- -CCGCCGCGC----------Ca------------ACGGCauGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 32394 0.68 0.616709
Target:  5'- cGGCGGCGUcccGGagcgcgUGCCGccGC-CGGCGa -3'
miRNA:   3'- -CCGCCGCG---CCa-----ACGGCa-UGaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 32491 0.66 0.752059
Target:  5'- gGGcCGGCGaCGGcgGCa----UCGGCGGg -3'
miRNA:   3'- -CC-GCCGC-GCCaaCGgcaugAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 32549 0.68 0.616709
Target:  5'- cGCGGCGCGG--GCCG-GCgCGcGUGGa -3'
miRNA:   3'- cCGCCGCGCCaaCGGCaUGaGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 32913 0.67 0.685393
Target:  5'- gGGCGcGCGUGGggGgCG-GCg-GGCGGg -3'
miRNA:   3'- -CCGC-CGCGCCaaCgGCaUGagCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 33036 0.66 0.761258
Target:  5'- uGCGGagcgucCGCGGaggGCCaggACUCGGCGc -3'
miRNA:   3'- cCGCC------GCGCCaa-CGGca-UGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 33601 0.7 0.501254
Target:  5'- gGGCGGCGCcGgcGCgGg---CGGCGGg -3'
miRNA:   3'- -CCGCCGCGcCaaCGgCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 33747 0.71 0.455872
Target:  5'- cGCGGCGCcGggGCCGggcccGCUC-GCGGg -3'
miRNA:   3'- cCGCCGCGcCaaCGGCa----UGAGcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 33782 0.69 0.538936
Target:  5'- cGGCGaGCGCuGGgccCCGcGCgggCGGCGGg -3'
miRNA:   3'- -CCGC-CGCG-CCaacGGCaUGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 33831 0.69 0.538936
Target:  5'- gGGgGGCGCGGgccccCUGgcGCUgGGCGGg -3'
miRNA:   3'- -CCgCCGCGCCaac--GGCa-UGAgCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 34459 0.69 0.577537
Target:  5'- gGGCacgGGC-CGGggGCCccGUACcugCGGCGGg -3'
miRNA:   3'- -CCG---CCGcGCCaaCGG--CAUGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 34925 0.66 0.714369
Target:  5'- cGCGGCcacGCGGggggcgGCCGgcgcgacccggGCcCGGCGGc -3'
miRNA:   3'- cCGCCG---CGCCaa----CGGCa----------UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 35012 0.66 0.752059
Target:  5'- uGCGGUGCGGccGgCGU-CUCGGUc- -3'
miRNA:   3'- cCGCCGCGCCaaCgGCAuGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 35693 0.74 0.299826
Target:  5'- cGGCGaGCccCGGUggGCCGgggGCUCGGUGGc -3'
miRNA:   3'- -CCGC-CGc-GCCAa-CGGCa--UGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 36809 0.66 0.714369
Target:  5'- cGGcCGGCGCuacgugccccGGUaUGCgGUGC-CGGCGc -3'
miRNA:   3'- -CC-GCCGCG----------CCA-ACGgCAUGaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 37008 0.66 0.770351
Target:  5'- gGGCuGCGCGGg-GCCaGUuuGCgggGGCGGg -3'
miRNA:   3'- -CCGcCGCGCCaaCGG-CA--UGag-CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 38939 0.67 0.665858
Target:  5'- cGGCGGC-CGGgcggGCCGcgg-CGcGCGGg -3'
miRNA:   3'- -CCGCCGcGCCaa--CGGCaugaGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 39341 0.67 0.703801
Target:  5'- cGCGGCcaagcugcgcgcgGCGGcaGCCGccucaUCGGCGGc -3'
miRNA:   3'- cCGCCG-------------CGCCaaCGGCaug--AGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.