miRNA display CGI


Results 41 - 60 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 123163 0.7 0.529418
Target:  5'- gGGCGGgGCGGgcGCgCGgGCgUGGUGGc -3'
miRNA:   3'- -CCGCCgCGCCaaCG-GCaUGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 122836 0.7 0.482849
Target:  5'- uGCGGCGCGGUcauacuccaGCCGgUACucgucgUCGGCGu -3'
miRNA:   3'- cCGCCGCGCCAa--------CGGC-AUG------AGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 122334 0.73 0.375464
Target:  5'- aGGUGGCGCucgcagagcucgccuGGcgGCCGcgGCUCGcGCGGc -3'
miRNA:   3'- -CCGCCGCG---------------CCaaCGGCa-UGAGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 121806 0.7 0.492012
Target:  5'- aGGgGGCGCGug-GCUGgGCUCuGCGGg -3'
miRNA:   3'- -CCgCCGCGCcaaCGGCaUGAGcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 121773 0.76 0.222552
Target:  5'- cGCGGUGgGGUgGCCGcgGC-CGGCGGg -3'
miRNA:   3'- cCGCCGCgCCAaCGGCa-UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 121650 0.71 0.473769
Target:  5'- cGGCGaGCGCGG--GCUGUccGCgUCGGCGu -3'
miRNA:   3'- -CCGC-CGCGCCaaCGGCA--UG-AGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 121503 0.69 0.558142
Target:  5'- cGGCGGgGCGGgcaugggGCCGUcgaUGGCGa -3'
miRNA:   3'- -CCGCCgCGCCaa-----CGGCAugaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 121394 0.73 0.344167
Target:  5'- cGGCGGCGCcugcccgagugcgacGGcUGCCGccgccgcUACggggCGGCGGg -3'
miRNA:   3'- -CCGCCGCG---------------CCaACGGC-------AUGa---GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 121063 0.69 0.587291
Target:  5'- uGGC-GCGCGGUgUGCgCGgcGC-CGGCGGc -3'
miRNA:   3'- -CCGcCGCGCCA-ACG-GCa-UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 118858 0.67 0.656049
Target:  5'- gGGCGGCGCGcccgcgGCCcuGgcCUCGGCc- -3'
miRNA:   3'- -CCGCCGCGCcaa---CGG--CauGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 118701 0.7 0.519961
Target:  5'- cGCGGCGUGGUccUGCUcaGCgucgCGGgCGGg -3'
miRNA:   3'- cCGCCGCGCCA--ACGGcaUGa---GCC-GCC- -5'
23744 5' -60.3 NC_005261.1 + 118639 0.71 0.456758
Target:  5'- cGGCGGCGCucuGGgccccggGCCGcGCgcucggggcugagggCGGCGGg -3'
miRNA:   3'- -CCGCCGCG---CCaa-----CGGCaUGa--------------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 118550 0.74 0.293208
Target:  5'- cGGCGcGCGCGaGgacGCCGUGCccgcgcgcgCGGCGGc -3'
miRNA:   3'- -CCGC-CGCGC-Caa-CGGCAUGa--------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 118399 0.66 0.752059
Target:  5'- uGGCGGcCGCGGgcGCCGcaGC-CGcGCuGGc -3'
miRNA:   3'- -CCGCC-GCGCCaaCGGCa-UGaGC-CG-CC- -5'
23744 5' -60.3 NC_005261.1 + 118235 0.68 0.636385
Target:  5'- cGCGGcCGCGGccuacGCCGU-CUgCGGCGu -3'
miRNA:   3'- cCGCC-GCGCCaa---CGGCAuGA-GCCGCc -5'
23744 5' -60.3 NC_005261.1 + 118169 0.72 0.388189
Target:  5'- cGCGGCGgGGcUUGCCGU-CUgGGCcgcGGg -3'
miRNA:   3'- cCGCCGCgCC-AACGGCAuGAgCCG---CC- -5'
23744 5' -60.3 NC_005261.1 + 118060 0.69 0.555248
Target:  5'- uGGCGGcCGCGGcagcgGCCGcagccgcgcucgucUGCU-GGCGGc -3'
miRNA:   3'- -CCGCC-GCGCCaa---CGGC--------------AUGAgCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 117914 0.66 0.752059
Target:  5'- cGGCuGCGCGGgaacgaagGCCG-GCUgCGGCc- -3'
miRNA:   3'- -CCGcCGCGCCaa------CGGCaUGA-GCCGcc -5'
23744 5' -60.3 NC_005261.1 + 116485 0.69 0.581434
Target:  5'- gGGCGGgGCGGgcgcGCgGUAUaaagagcgccgccgCGGCGGc -3'
miRNA:   3'- -CCGCCgCGCCaa--CGgCAUGa-------------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 114350 0.72 0.404487
Target:  5'- aGCGGCGCGuGgccgcgGCCG-AgUCGGUGGc -3'
miRNA:   3'- cCGCCGCGC-Caa----CGGCaUgAGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.