miRNA display CGI


Results 61 - 80 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 112935 0.69 0.590223
Target:  5'- gGGCGGCGCGcucgccuucgacuucGCCGcGCUguccaCGGCGGc -3'
miRNA:   3'- -CCGCCGCGCcaa------------CGGCaUGA-----GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 111669 0.68 0.597075
Target:  5'- cGCGcCGCGGUggcGgCGUACgUCGGCGa -3'
miRNA:   3'- cCGCcGCGCCAa--CgGCAUG-AGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 111452 0.66 0.761258
Target:  5'- cGGCGaGC-CGGgcGCCGgcgagGCcaaaaGGCGGg -3'
miRNA:   3'- -CCGC-CGcGCCaaCGGCa----UGag---CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 111085 0.72 0.412797
Target:  5'- gGGCcuGGUGUGGgggGCCGgggACUgGGUGGa -3'
miRNA:   3'- -CCG--CCGCGCCaa-CGGCa--UGAgCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 110243 0.69 0.558142
Target:  5'- gGGCGGCGCGGcgcCCGggggGCU--GCGGg -3'
miRNA:   3'- -CCGCCGCGCCaacGGCa---UGAgcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 109828 0.68 0.615725
Target:  5'- cGGCGGcCGCcgaaucuGGcgUGCCGUuggUGGCGGc -3'
miRNA:   3'- -CCGCC-GCG-------CCa-ACGGCAugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 109327 0.68 0.616709
Target:  5'- cGCGaGCGCGGccGCgGgg-UCGGCGGc -3'
miRNA:   3'- cCGC-CGCGCCaaCGgCaugAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 109122 0.66 0.761258
Target:  5'- gGGCGGCGg---UGUCGUGCgCGGCc- -3'
miRNA:   3'- -CCGCCGCgccaACGGCAUGaGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 107961 0.69 0.577537
Target:  5'- cGCGGcCGCGGg-GCCaUGCagUGGCGGa -3'
miRNA:   3'- cCGCC-GCGCCaaCGGcAUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 107694 0.67 0.695103
Target:  5'- cGCGGCGgGGgcGCCGccgaacgucgcUGCcgCGGCaGGc -3'
miRNA:   3'- cCGCCGCgCCaaCGGC-----------AUGa-GCCG-CC- -5'
23744 5' -60.3 NC_005261.1 + 107162 0.7 0.492012
Target:  5'- aGGCGGCcaGCGccu-CCGU-CUCGGCGGc -3'
miRNA:   3'- -CCGCCG--CGCcaacGGCAuGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 105223 0.7 0.482849
Target:  5'- cGCGGgcCGCGGccgcgGCCGUGaucugCGGCGGc -3'
miRNA:   3'- cCGCC--GCGCCaa---CGGCAUga---GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 104121 0.72 0.421211
Target:  5'- aGCcGCGCGGUUcGCCGcgaGCUCGGCc- -3'
miRNA:   3'- cCGcCGCGCCAA-CGGCa--UGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 103872 0.69 0.538936
Target:  5'- cGGCGGgGCGGcgccGCCGgg--CGGCGc -3'
miRNA:   3'- -CCGCCgCGCCaa--CGGCaugaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 103614 0.68 0.597075
Target:  5'- cGGCaGCGCGGgaGgCGg---CGGCGGc -3'
miRNA:   3'- -CCGcCGCGCCaaCgGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 102957 0.7 0.482849
Target:  5'- cGGCGGcCGCGGgcGCCGcggGCUCcGCc- -3'
miRNA:   3'- -CCGCC-GCGCCaaCGGCa--UGAGcCGcc -5'
23744 5' -60.3 NC_005261.1 + 102457 0.66 0.742762
Target:  5'- cGGCcucGGCGCGcaGgcGCCGgaccucCUCGGCGc -3'
miRNA:   3'- -CCG---CCGCGC--CaaCGGCau----GAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 102426 0.66 0.770351
Target:  5'- cGCuGCGCGGccGCCuc-CUCGGCGc -3'
miRNA:   3'- cCGcCGCGCCaaCGGcauGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 102326 0.69 0.548513
Target:  5'- cGCGGCGCGca-GCCGcgccaGCUCGGCc- -3'
miRNA:   3'- cCGCCGCGCcaaCGGCa----UGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 101441 0.74 0.306559
Target:  5'- aGGCGGCGCGGUccagcGCUGgccccaGCgccgcCGGCGGc -3'
miRNA:   3'- -CCGCCGCGCCAa----CGGCa-----UGa----GCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.