miRNA display CGI


Results 41 - 60 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 121773 0.76 0.222552
Target:  5'- cGCGGUGgGGUgGCCGcgGC-CGGCGGg -3'
miRNA:   3'- cCGCCGCgCCAaCGGCa-UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 135450 0.77 0.207313
Target:  5'- aGGCGGCGCGGgcGCugcgggaccuCGUACUgcgCGGCGa -3'
miRNA:   3'- -CCGCCGCGCCaaCG----------GCAUGA---GCCGCc -5'
23744 5' -60.3 NC_005261.1 + 93733 0.77 0.197661
Target:  5'- cGGCGGCaGCGcgcGCuuCGUACUCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCcaaCG--GCAUGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 28783 0.78 0.166914
Target:  5'- cGCGGCGCGGgcGCuCGcgGCcgCGGCGGa -3'
miRNA:   3'- cCGCCGCGCCaaCG-GCa-UGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 47711 0.84 0.0766
Target:  5'- cGGCGGCGuCGGggGCCuc-CUCGGCGGa -3'
miRNA:   3'- -CCGCCGC-GCCaaCGGcauGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 297 0.75 0.261827
Target:  5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 137944 0.75 0.261827
Target:  5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 17169 0.74 0.293208
Target:  5'- cGCGGCGCGGgcgugggcaGCCcUGCcgCGGCGGc -3'
miRNA:   3'- cCGCCGCGCCaa-------CGGcAUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 118550 0.74 0.293208
Target:  5'- cGGCGcGCGCGaGgacGCCGUGCccgcgcgcgCGGCGGc -3'
miRNA:   3'- -CCGC-CGCGC-Caa-CGGCAUGa--------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 11927 0.74 0.293208
Target:  5'- cGGCGGCuGCGGcgGcCCGcGCcgCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaC-GGCaUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 97540 0.74 0.292553
Target:  5'- cGGCGGCcccgGCGGUgccgGcCCGUccgcccgggguugGCUCGGUGGc -3'
miRNA:   3'- -CCGCCG----CGCCAa---C-GGCA-------------UGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 50996 0.75 0.286705
Target:  5'- cGGCGGCGCGuggGCgCGgcgggaGCUCGGCGa -3'
miRNA:   3'- -CCGCCGCGCcaaCG-GCa-----UGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 69296 0.75 0.280315
Target:  5'- -cCGGCGCGGggcGCCGguggCGGCGGg -3'
miRNA:   3'- ccGCCGCGCCaa-CGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 5520 0.75 0.280315
Target:  5'- cGGCGGCGaGGccGCCGgcUUCGGCGc -3'
miRNA:   3'- -CCGCCGCgCCaaCGGCauGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 127313 0.75 0.276536
Target:  5'- uGGCGGUggggcccugccgcccGCGGggGCCGgag-CGGCGGg -3'
miRNA:   3'- -CCGCCG---------------CGCCaaCGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 31469 0.75 0.27404
Target:  5'- cGGCGGCcugaGUGGccGCCgGUGCgCGGCGGg -3'
miRNA:   3'- -CCGCCG----CGCCaaCGG-CAUGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 12339 0.75 0.27404
Target:  5'- uGGcCGGCGCGGccGCCGccg-CGGCGGc -3'
miRNA:   3'- -CC-GCCGCGCCaaCGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 127495 0.75 0.267877
Target:  5'- uGGCGGCuGCc--UGCCGggcgUACUCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGccaACGGC----AUGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 81296 0.75 0.261827
Target:  5'- cGCGGCGCGcacguccgUGCCGUugUCGG-GGu -3'
miRNA:   3'- cCGCCGCGCca------ACGGCAugAGCCgCC- -5'
23744 5' -60.3 NC_005261.1 + 137980 0.75 0.261827
Target:  5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.