Results 81 - 100 of 310 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23744 | 5' | -60.3 | NC_005261.1 | + | 121394 | 0.73 | 0.344167 |
Target: 5'- cGGCGGCGCcugcccgagugcgacGGcUGCCGccgccgcUACggggCGGCGGg -3' miRNA: 3'- -CCGCCGCG---------------CCaACGGC-------AUGa---GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 31649 | 0.73 | 0.344908 |
Target: 5'- cGCGGCGCGGUcgaguaccucUGCC-UGCggcuggccgcggcgCGGCGGc -3' miRNA: 3'- cCGCCGCGCCA----------ACGGcAUGa-------------GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 1596 | 0.73 | 0.349376 |
Target: 5'- uGGCGGCGCGGUggcugGCCGc-CUCGcccuccGCGa -3' miRNA: 3'- -CCGCCGCGCCAa----CGGCauGAGC------CGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 22109 | 0.73 | 0.364564 |
Target: 5'- gGGCGGUguGCGGagagugcgUGCgGUAUaCGGCGGg -3' miRNA: 3'- -CCGCCG--CGCCa-------ACGgCAUGaGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 56140 | 0.73 | 0.364564 |
Target: 5'- gGGgGGCGCGG--GCCGagggugGCggcagCGGCGGg -3' miRNA: 3'- -CCgCCGCGCCaaCGGCa-----UGa----GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 81428 | 0.73 | 0.364564 |
Target: 5'- aGGCGGCGUcGUcgGCCGccccgCGGCGGg -3' miRNA: 3'- -CCGCCGCGcCAa-CGGCauga-GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 97390 | 0.73 | 0.364564 |
Target: 5'- cGCGGCuuucGCGccUGCCGcggGCUUGGCGGg -3' miRNA: 3'- cCGCCG----CGCcaACGGCa--UGAGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 131196 | 0.74 | 0.320371 |
Target: 5'- cGCGGCGCGGUcGCCGc---CGGCGc -3' miRNA: 3'- cCGCCGCGCCAaCGGCaugaGCCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 75481 | 0.74 | 0.320371 |
Target: 5'- cGGCGGCGCGG--GCCGcUACgagcGCGGg -3' miRNA: 3'- -CCGCCGCGCCaaCGGC-AUGagc-CGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 98048 | 0.74 | 0.313408 |
Target: 5'- uGGCGGcCGCGGgcgGCgGgaccGCgggCGGCGGg -3' miRNA: 3'- -CCGCC-GCGCCaa-CGgCa---UGa--GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 11927 | 0.74 | 0.293208 |
Target: 5'- cGGCGGCuGCGGcgGcCCGcGCcgCGGCGGc -3' miRNA: 3'- -CCGCCG-CGCCaaC-GGCaUGa-GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 118550 | 0.74 | 0.293208 |
Target: 5'- cGGCGcGCGCGaGgacGCCGUGCccgcgcgcgCGGCGGc -3' miRNA: 3'- -CCGC-CGCGC-Caa-CGGCAUGa--------GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 17169 | 0.74 | 0.293208 |
Target: 5'- cGCGGCGCGGgcgugggcaGCCcUGCcgCGGCGGc -3' miRNA: 3'- cCGCCGCGCCaa-------CGGcAUGa-GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 29811 | 0.74 | 0.299826 |
Target: 5'- cGGCGGCGCGGgcgcccgcGCCGcGCUCGcCGa -3' miRNA: 3'- -CCGCCGCGCCaa------CGGCaUGAGCcGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 35693 | 0.74 | 0.299826 |
Target: 5'- cGGCGaGCccCGGUggGCCGgggGCUCGGUGGc -3' miRNA: 3'- -CCGC-CGc-GCCAa-CGGCa--UGAGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 23595 | 0.74 | 0.302506 |
Target: 5'- cGGCGGUgGUGGUggcugucgccgccgcUGCCGggGCgCGGCGGg -3' miRNA: 3'- -CCGCCG-CGCCA---------------ACGGCa-UGaGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 74945 | 0.74 | 0.306559 |
Target: 5'- uGCGGCGCGGgcGC---GCUCGGCGc -3' miRNA: 3'- cCGCCGCGCCaaCGgcaUGAGCCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 101441 | 0.74 | 0.306559 |
Target: 5'- aGGCGGCGCGGUccagcGCUGgccccaGCgccgcCGGCGGc -3' miRNA: 3'- -CCGCCGCGCCAa----CGGCa-----UGa----GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 45617 | 0.74 | 0.306559 |
Target: 5'- cGGCGGCGCGGc-GCgGcg--CGGCGGg -3' miRNA: 3'- -CCGCCGCGCCaaCGgCaugaGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 59482 | 0.74 | 0.313408 |
Target: 5'- cGcCGGCGCGGccGCCGcGCcagCGGCGGc -3' miRNA: 3'- cC-GCCGCGCCaaCGGCaUGa--GCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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