Results 41 - 60 of 310 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23744 | 5' | -60.3 | NC_005261.1 | + | 121773 | 0.76 | 0.222552 |
Target: 5'- cGCGGUGgGGUgGCCGcgGC-CGGCGGg -3' miRNA: 3'- cCGCCGCgCCAaCGGCa-UGaGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 135450 | 0.77 | 0.207313 |
Target: 5'- aGGCGGCGCGGgcGCugcgggaccuCGUACUgcgCGGCGa -3' miRNA: 3'- -CCGCCGCGCCaaCG----------GCAUGA---GCCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 93733 | 0.77 | 0.197661 |
Target: 5'- cGGCGGCaGCGcgcGCuuCGUACUCGGCGGc -3' miRNA: 3'- -CCGCCG-CGCcaaCG--GCAUGAGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 28783 | 0.78 | 0.166914 |
Target: 5'- cGCGGCGCGGgcGCuCGcgGCcgCGGCGGa -3' miRNA: 3'- cCGCCGCGCCaaCG-GCa-UGa-GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 47711 | 0.84 | 0.0766 |
Target: 5'- cGGCGGCGuCGGggGCCuc-CUCGGCGGa -3' miRNA: 3'- -CCGCCGC-GCCaaCGGcauGAGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 297 | 0.75 | 0.261827 |
Target: 5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3' miRNA: 3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 137944 | 0.75 | 0.261827 |
Target: 5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3' miRNA: 3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 17169 | 0.74 | 0.293208 |
Target: 5'- cGCGGCGCGGgcgugggcaGCCcUGCcgCGGCGGc -3' miRNA: 3'- cCGCCGCGCCaa-------CGGcAUGa-GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 118550 | 0.74 | 0.293208 |
Target: 5'- cGGCGcGCGCGaGgacGCCGUGCccgcgcgcgCGGCGGc -3' miRNA: 3'- -CCGC-CGCGC-Caa-CGGCAUGa--------GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 11927 | 0.74 | 0.293208 |
Target: 5'- cGGCGGCuGCGGcgGcCCGcGCcgCGGCGGc -3' miRNA: 3'- -CCGCCG-CGCCaaC-GGCaUGa-GCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 97540 | 0.74 | 0.292553 |
Target: 5'- cGGCGGCcccgGCGGUgccgGcCCGUccgcccgggguugGCUCGGUGGc -3' miRNA: 3'- -CCGCCG----CGCCAa---C-GGCA-------------UGAGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 50996 | 0.75 | 0.286705 |
Target: 5'- cGGCGGCGCGuggGCgCGgcgggaGCUCGGCGa -3' miRNA: 3'- -CCGCCGCGCcaaCG-GCa-----UGAGCCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 69296 | 0.75 | 0.280315 |
Target: 5'- -cCGGCGCGGggcGCCGguggCGGCGGg -3' miRNA: 3'- ccGCCGCGCCaa-CGGCaugaGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 5520 | 0.75 | 0.280315 |
Target: 5'- cGGCGGCGaGGccGCCGgcUUCGGCGc -3' miRNA: 3'- -CCGCCGCgCCaaCGGCauGAGCCGCc -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 127313 | 0.75 | 0.276536 |
Target: 5'- uGGCGGUggggcccugccgcccGCGGggGCCGgag-CGGCGGg -3' miRNA: 3'- -CCGCCG---------------CGCCaaCGGCaugaGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 31469 | 0.75 | 0.27404 |
Target: 5'- cGGCGGCcugaGUGGccGCCgGUGCgCGGCGGg -3' miRNA: 3'- -CCGCCG----CGCCaaCGG-CAUGaGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 12339 | 0.75 | 0.27404 |
Target: 5'- uGGcCGGCGCGGccGCCGccg-CGGCGGc -3' miRNA: 3'- -CC-GCCGCGCCaaCGGCaugaGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 127495 | 0.75 | 0.267877 |
Target: 5'- uGGCGGCuGCc--UGCCGggcgUACUCGGCGGc -3' miRNA: 3'- -CCGCCG-CGccaACGGC----AUGAGCCGCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 81296 | 0.75 | 0.261827 |
Target: 5'- cGCGGCGCGcacguccgUGCCGUugUCGG-GGu -3' miRNA: 3'- cCGCCGCGCca------ACGGCAugAGCCgCC- -5' |
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23744 | 5' | -60.3 | NC_005261.1 | + | 137980 | 0.75 | 0.261827 |
Target: 5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3' miRNA: 3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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