miRNA display CGI


Results 21 - 40 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 75846 0.66 0.761258
Target:  5'- aGgGGCGCGcGgcGCCGa---CGGCGGc -3'
miRNA:   3'- cCgCCGCGC-CaaCGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 66025 0.66 0.761258
Target:  5'- cGcCGGCGC----GUCGUAgUCGGCGGc -3'
miRNA:   3'- cC-GCCGCGccaaCGGCAUgAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 109122 0.66 0.761258
Target:  5'- gGGCGGCGg---UGUCGUGCgCGGCc- -3'
miRNA:   3'- -CCGCCGCgccaACGGCAUGaGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 99089 0.66 0.761258
Target:  5'- gGGCGGCGCGGcgcgcaGCgGcuUGCUC-GCGa -3'
miRNA:   3'- -CCGCCGCGCCaa----CGgC--AUGAGcCGCc -5'
23744 5' -60.3 NC_005261.1 + 118399 0.66 0.752059
Target:  5'- uGGCGGcCGCGGgcGCCGcaGC-CGcGCuGGc -3'
miRNA:   3'- -CCGCC-GCGCCaaCGGCa-UGaGC-CG-CC- -5'
23744 5' -60.3 NC_005261.1 + 73762 0.66 0.752059
Target:  5'- cGGCcgcuucuacgaGGCGCuGGccUGCgaCGUGCgcgCGGCGGu -3'
miRNA:   3'- -CCG-----------CCGCG-CCa-ACG--GCAUGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 32491 0.66 0.752059
Target:  5'- gGGcCGGCGaCGGcgGCa----UCGGCGGg -3'
miRNA:   3'- -CC-GCCGC-GCCaaCGgcaugAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 35012 0.66 0.752059
Target:  5'- uGCGGUGCGGccGgCGU-CUCGGUc- -3'
miRNA:   3'- cCGCCGCGCCaaCgGCAuGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 10902 0.66 0.752059
Target:  5'- cGGCGGCgGCGGcagcGCCGccGC-CGGCc- -3'
miRNA:   3'- -CCGCCG-CGCCaa--CGGCa-UGaGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 90895 0.66 0.752059
Target:  5'- cGGCauGGCGCGGcagGU----CUCGGCGGc -3'
miRNA:   3'- -CCG--CCGCGCCaa-CGgcauGAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 117914 0.66 0.752059
Target:  5'- cGGCuGCGCGGgaacgaagGCCG-GCUgCGGCc- -3'
miRNA:   3'- -CCGcCGCGCCaa------CGGCaUGA-GCCGcc -5'
23744 5' -60.3 NC_005261.1 + 125750 0.66 0.752059
Target:  5'- gGGcCGGgGCcagGGcUGCCGcggGCUCGGCu- -3'
miRNA:   3'- -CC-GCCgCG---CCaACGGCa--UGAGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 23016 0.66 0.752059
Target:  5'- aGGCGGCccGCGaacgccuUUGCCGggaggGgaCGGCGGc -3'
miRNA:   3'- -CCGCCG--CGCc------AACGGCa----UgaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 133345 0.66 0.752059
Target:  5'- cGCGcGCGCGGcgcUGCCGcgcaggGCuUCGGCu- -3'
miRNA:   3'- cCGC-CGCGCCa--ACGGCa-----UG-AGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 50640 0.66 0.752059
Target:  5'- gGGCGGCGgGGUggcGCCGgcgaacgcGCUCGcccaaguccGCGc -3'
miRNA:   3'- -CCGCCGCgCCAa--CGGCa-------UGAGC---------CGCc -5'
23744 5' -60.3 NC_005261.1 + 132063 0.66 0.751133
Target:  5'- uGGCGGCcgaggucGCGGccGCCGUcgccGCUgCcGCGGa -3'
miRNA:   3'- -CCGCCG-------CGCCaaCGGCA----UGA-GcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 1951 0.66 0.746492
Target:  5'- cGCGGCGCGcagguacacGUgcgccugcccgacgGCCGggccaUCGGCGGc -3'
miRNA:   3'- cCGCCGCGC---------CAa-------------CGGCaug--AGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 90208 0.66 0.742762
Target:  5'- cGGgGGCgGCGGagcGCCcucGCgCGGCGGg -3'
miRNA:   3'- -CCgCCG-CGCCaa-CGGca-UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 102457 0.66 0.742762
Target:  5'- cGGCcucGGCGCGcaGgcGCCGgaccucCUCGGCGc -3'
miRNA:   3'- -CCG---CCGCGC--CaaCGGCau----GAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 125946 0.66 0.742762
Target:  5'- cGCuGGCGCGGggucGCaCGgcagcacuucGCUCGGCGa -3'
miRNA:   3'- cCG-CCGCGCCaa--CG-GCa---------UGAGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.