miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23745 3' -63.5 NC_005261.1 + 71073 0.65 0.576983
Target:  5'- gCGCGGCGGgCGGGgcguccgGGCCcgagaagGCGUacacggcgCGCAg -3'
miRNA:   3'- -GCGCCGCCgGCCC-------UCGG-------CGUAa-------GCGU- -5'
23745 3' -63.5 NC_005261.1 + 50992 0.66 0.569239
Target:  5'- cCGaCGGCGGCgcgugggcgcggCGGGAGCUcgGCGagCGCc -3'
miRNA:   3'- -GC-GCCGCCG------------GCCCUCGG--CGUaaGCGu -5'
23745 3' -63.5 NC_005261.1 + 23534 0.66 0.569239
Target:  5'- gGCGaGCGGCagaGGcGGCaggaGCcgUCGCAg -3'
miRNA:   3'- gCGC-CGCCGg--CCcUCGg---CGuaAGCGU- -5'
23745 3' -63.5 NC_005261.1 + 61573 0.66 0.569239
Target:  5'- gGUGGC-GCUGGuGAugGCCGUGUUCGUg -3'
miRNA:   3'- gCGCCGcCGGCC-CU--CGGCGUAAGCGu -5'
23745 3' -63.5 NC_005261.1 + 73130 0.66 0.569239
Target:  5'- gCGCGGUccccgGGCCGGGcucgcgccgccaGGCgGCGUugUUGCu -3'
miRNA:   3'- -GCGCCG-----CCGGCCC------------UCGgCGUA--AGCGu -5'
23745 3' -63.5 NC_005261.1 + 82555 0.66 0.569239
Target:  5'- uCGCccGCGGCCGcGcGCCGCAgcagcUCGCGc -3'
miRNA:   3'- -GCGc-CGCCGGCcCuCGGCGUa----AGCGU- -5'
23745 3' -63.5 NC_005261.1 + 12330 0.66 0.569239
Target:  5'- gCGCGcGCuuGGCCGGcGcGGCCGCcgcCGCGg -3'
miRNA:   3'- -GCGC-CG--CCGGCC-C-UCGGCGuaaGCGU- -5'
23745 3' -63.5 NC_005261.1 + 124782 0.66 0.569239
Target:  5'- aGCGGgGGCCcuuccgacAGCCGCucgUCGCGc -3'
miRNA:   3'- gCGCCgCCGGccc-----UCGGCGua-AGCGU- -5'
23745 3' -63.5 NC_005261.1 + 121187 0.66 0.569239
Target:  5'- aCGgGGCcggGGCCGGGcccggGGCCGCGggcCGgAg -3'
miRNA:   3'- -GCgCCG---CCGGCCC-----UCGGCGUaa-GCgU- -5'
23745 3' -63.5 NC_005261.1 + 136907 0.66 0.569239
Target:  5'- gCGUGGUgugGGCCGcGcGGCCGCgg-CGCAu -3'
miRNA:   3'- -GCGCCG---CCGGC-CcUCGGCGuaaGCGU- -5'
23745 3' -63.5 NC_005261.1 + 134710 0.66 0.569239
Target:  5'- cCGCGGCgcgcccagacccGGCCGGGAcCCGgAcUCgGCGa -3'
miRNA:   3'- -GCGCCG------------CCGGCCCUcGGCgUaAG-CGU- -5'
23745 3' -63.5 NC_005261.1 + 32161 0.66 0.566342
Target:  5'- cCGCuGCGGCCGGuguaccuggccugcGGGCgGCGcgCGCu -3'
miRNA:   3'- -GCGcCGCCGGCC--------------CUCGgCGUaaGCGu -5'
23745 3' -63.5 NC_005261.1 + 88190 0.66 0.559595
Target:  5'- gGCGGC-GCCGGcgaggcGGGCCGCGccggcaagCGCGc -3'
miRNA:   3'- gCGCCGcCGGCC------CUCGGCGUaa------GCGU- -5'
23745 3' -63.5 NC_005261.1 + 81355 0.66 0.559595
Target:  5'- gGCGGgGGCuugCGGGGGgCGCcgggcUCGCu -3'
miRNA:   3'- gCGCCgCCG---GCCCUCgGCGua---AGCGu -5'
23745 3' -63.5 NC_005261.1 + 2083 0.66 0.559595
Target:  5'- cCGCGGaaGGCCaGGucCCGCG-UCGCGa -3'
miRNA:   3'- -GCGCCg-CCGGcCCucGGCGUaAGCGU- -5'
23745 3' -63.5 NC_005261.1 + 113570 0.66 0.559595
Target:  5'- aGCaGUGGUCGGuGGCCGCcg-CGCu -3'
miRNA:   3'- gCGcCGCCGGCCcUCGGCGuaaGCGu -5'
23745 3' -63.5 NC_005261.1 + 87064 0.66 0.559595
Target:  5'- aGCGccaccGCGGCCGGGcccAGCaCGUAgccgUGCAg -3'
miRNA:   3'- gCGC-----CGCCGGCCC---UCG-GCGUaa--GCGU- -5'
23745 3' -63.5 NC_005261.1 + 55438 0.66 0.559595
Target:  5'- cCGCGagcccuccgaGCGGCgCGGuGGGCCaGUcgUCGCu -3'
miRNA:   3'- -GCGC----------CGCCG-GCC-CUCGG-CGuaAGCGu -5'
23745 3' -63.5 NC_005261.1 + 123419 0.66 0.559595
Target:  5'- aGgGGCGGgcucgccaCGGGccgcAGCCGCAgcUCGCGc -3'
miRNA:   3'- gCgCCGCCg-------GCCC----UCGGCGUa-AGCGU- -5'
23745 3' -63.5 NC_005261.1 + 17479 0.66 0.559595
Target:  5'- aCGCgGGCGcGCCGGGGGguccuagaCGCGga-GCAu -3'
miRNA:   3'- -GCG-CCGC-CGGCCCUCg-------GCGUaagCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.