miRNA display CGI


Results 21 - 40 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23745 3' -63.5 NC_005261.1 + 100817 0.66 0.556711
Target:  5'- gCGCGuGCgccugcgccgcccaGGCCGGGAGCUcgGCGaccugCGCGu -3'
miRNA:   3'- -GCGC-CG--------------CCGGCCCUCGG--CGUaa---GCGU- -5'
23745 3' -63.5 NC_005261.1 + 86590 0.66 0.556711
Target:  5'- gGCGGCGGCgccguccuuggcguCGGccgcGCCGCcgUCGUc -3'
miRNA:   3'- gCGCCGCCG--------------GCCcu--CGGCGuaAGCGu -5'
23745 3' -63.5 NC_005261.1 + 74451 0.66 0.549998
Target:  5'- gGCGGgGGgUGGGGgcGCCGCccccggCGCGg -3'
miRNA:   3'- gCGCCgCCgGCCCU--CGGCGuaa---GCGU- -5'
23745 3' -63.5 NC_005261.1 + 5823 0.66 0.549998
Target:  5'- aGCGGCGGCCGaugcGcGCCGgGUUacgGCGg -3'
miRNA:   3'- gCGCCGCCGGCc---CuCGGCgUAAg--CGU- -5'
23745 3' -63.5 NC_005261.1 + 110815 0.66 0.549998
Target:  5'- gGCGGgGGCgGacGGGGCCGCGgaCGa- -3'
miRNA:   3'- gCGCCgCCGgC--CCUCGGCGUaaGCgu -5'
23745 3' -63.5 NC_005261.1 + 9359 0.66 0.549998
Target:  5'- cCGCcGaCGauccCCGGGAGCCGCAUU-GCGa -3'
miRNA:   3'- -GCGcC-GCc---GGCCCUCGGCGUAAgCGU- -5'
23745 3' -63.5 NC_005261.1 + 34287 0.66 0.540451
Target:  5'- gGCGGcCGGCgGGGAcGCCGgGa--GCGa -3'
miRNA:   3'- gCGCC-GCCGgCCCU-CGGCgUaagCGU- -5'
23745 3' -63.5 NC_005261.1 + 19181 0.66 0.540451
Target:  5'- aGCaGCuGCCGGGcgcAGUCGCcUUCGCc -3'
miRNA:   3'- gCGcCGcCGGCCC---UCGGCGuAAGCGu -5'
23745 3' -63.5 NC_005261.1 + 78618 0.66 0.540451
Target:  5'- gGCuGUGGUCGGGGcgccagguccGCCGaGUUCGCGc -3'
miRNA:   3'- gCGcCGCCGGCCCU----------CGGCgUAAGCGU- -5'
23745 3' -63.5 NC_005261.1 + 108337 0.66 0.540451
Target:  5'- cCGCGaccCGcGCCaGGGccGCCGCcgUCGCAg -3'
miRNA:   3'- -GCGCc--GC-CGG-CCCu-CGGCGuaAGCGU- -5'
23745 3' -63.5 NC_005261.1 + 70815 0.66 0.540451
Target:  5'- gCGcCGGCGGCCccGGGcgcGCCgGCGcgCGCGu -3'
miRNA:   3'- -GC-GCCGCCGG--CCCu--CGG-CGUaaGCGU- -5'
23745 3' -63.5 NC_005261.1 + 17126 0.66 0.540451
Target:  5'- uCGCGGCGG-CGGGuacGCCgGCGggUCGaCGu -3'
miRNA:   3'- -GCGCCGCCgGCCCu--CGG-CGUa-AGC-GU- -5'
23745 3' -63.5 NC_005261.1 + 69030 0.66 0.540451
Target:  5'- cCGUGGCGGacuaCGGGuucagcuucuGCCaGCGcUUCGCGc -3'
miRNA:   3'- -GCGCCGCCg---GCCCu---------CGG-CGU-AAGCGU- -5'
23745 3' -63.5 NC_005261.1 + 67488 0.66 0.540451
Target:  5'- cCGCGGCcGCCGccAGCCGCg--CGUAg -3'
miRNA:   3'- -GCGCCGcCGGCccUCGGCGuaaGCGU- -5'
23745 3' -63.5 NC_005261.1 + 118004 0.66 0.540451
Target:  5'- gGCGGCGGCgCuGGAcGCUGuCGgaCGCAc -3'
miRNA:   3'- gCGCCGCCG-GcCCU-CGGC-GUaaGCGU- -5'
23745 3' -63.5 NC_005261.1 + 118168 0.66 0.540451
Target:  5'- uCGCGGCGgggcuuGCCGucuGGGCCGCGggcccCGCGc -3'
miRNA:   3'- -GCGCCGC------CGGCc--CUCGGCGUaa---GCGU- -5'
23745 3' -63.5 NC_005261.1 + 69195 0.66 0.538549
Target:  5'- uCGCGgacGCGGCCaacgacguccuccGGGAGCUGUgcgcgcuggggcgGUUCGCc -3'
miRNA:   3'- -GCGC---CGCCGG-------------CCCUCGGCG-------------UAAGCGu -5'
23745 3' -63.5 NC_005261.1 + 29699 0.66 0.530962
Target:  5'- aCGUGGCGGCCugcguGGccauGAGCCGC---CGCu -3'
miRNA:   3'- -GCGCCGCCGG-----CC----CUCGGCGuaaGCGu -5'
23745 3' -63.5 NC_005261.1 + 98351 0.66 0.530962
Target:  5'- aCGCGGgGGCgGGGgugggcgcgGGCUcugGCGggCGCAa -3'
miRNA:   3'- -GCGCCgCCGgCCC---------UCGG---CGUaaGCGU- -5'
23745 3' -63.5 NC_005261.1 + 71421 0.66 0.530962
Target:  5'- gCGCGGggccCGGcCCGGGc-CCGCGgcgCGCAg -3'
miRNA:   3'- -GCGCC----GCC-GGCCCucGGCGUaa-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.