miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23745 5' -50.6 NC_005261.1 + 11048 0.66 0.993282
Target:  5'- --cGgcACUCGGGCgccgCCCA---GGCGc -3'
miRNA:   3'- cuaCauUGAGCUCGa---GGGUaauCCGC- -5'
23745 5' -50.6 NC_005261.1 + 115982 0.66 0.992241
Target:  5'- aGGUGUAgucgucGCUgaCGAGCcgCCCG--AGGCGg -3'
miRNA:   3'- -CUACAU------UGA--GCUCGa-GGGUaaUCCGC- -5'
23745 5' -50.6 NC_005261.1 + 18658 0.66 0.992241
Target:  5'- --aGgu-CUCGGGCgggcCCCAgcGGGCGa -3'
miRNA:   3'- cuaCauuGAGCUCGa---GGGUaaUCCGC- -5'
23745 5' -50.6 NC_005261.1 + 120951 0.66 0.989777
Target:  5'- aGGUGgagGCUCGcGC-CCCGcgGGGCGc -3'
miRNA:   3'- -CUACau-UGAGCuCGaGGGUaaUCCGC- -5'
23745 5' -50.6 NC_005261.1 + 79406 0.66 0.986738
Target:  5'- -cUGUAG-UCGAGCaggCCCGUgucGGCGa -3'
miRNA:   3'- cuACAUUgAGCUCGa--GGGUAau-CCGC- -5'
23745 5' -50.6 NC_005261.1 + 122334 0.67 0.98305
Target:  5'- aGGUGgcGCUCgcaGAGCUCgCCu---GGCGg -3'
miRNA:   3'- -CUACauUGAG---CUCGAG-GGuaauCCGC- -5'
23745 5' -50.6 NC_005261.1 + 109370 0.67 0.978634
Target:  5'- -----cGCUCGAGCgcggCCCAgaGGGCc -3'
miRNA:   3'- cuacauUGAGCUCGa---GGGUaaUCCGc -5'
23745 5' -50.6 NC_005261.1 + 85279 0.68 0.96396
Target:  5'- gGggGUuaGGCgUCGGGCUCCC---GGGCGg -3'
miRNA:   3'- -CuaCA--UUG-AGCUCGAGGGuaaUCCGC- -5'
23745 5' -50.6 NC_005261.1 + 32475 0.68 0.96034
Target:  5'- ----gGACUCGGGCUUCCcg-GGGCc -3'
miRNA:   3'- cuacaUUGAGCUCGAGGGuaaUCCGc -5'
23745 5' -50.6 NC_005261.1 + 85369 0.69 0.958052
Target:  5'- gGAUGUucgcgccgccgccCUCGGGCUUCUggUAGGCGc -3'
miRNA:   3'- -CUACAuu-----------GAGCUCGAGGGuaAUCCGC- -5'
23745 5' -50.6 NC_005261.1 + 71563 0.74 0.779003
Target:  5'- cAUGUGGCUguccagccgCGAGCUCCCGUagccgaucacgUAGGCc -3'
miRNA:   3'- cUACAUUGA---------GCUCGAGGGUA-----------AUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.