miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23746 3' -63.5 NC_005261.1 + 55368 0.66 0.576618
Target:  5'- gGCCcagcCUGGCCCGC-CGC-CgcUGCCGc -3'
miRNA:   3'- -CGGc---GACCGGGCGcGCGaGaaGCGGC- -5'
23746 3' -63.5 NC_005261.1 + 52554 0.66 0.576618
Target:  5'- gGCUGCUcuaGcGaCUCGCGCGCgagC-UCGCCGu -3'
miRNA:   3'- -CGGCGA---C-C-GGGCGCGCGa--GaAGCGGC- -5'
23746 3' -63.5 NC_005261.1 + 83301 0.66 0.576618
Target:  5'- gGCUGCgcgGGgUCGUGCaGCUCgggcggCGCCa -3'
miRNA:   3'- -CGGCGa--CCgGGCGCG-CGAGaa----GCGGc -5'
23746 3' -63.5 NC_005261.1 + 16720 0.66 0.576618
Target:  5'- cGCCGguaCUGGCCCucggcgagcCGCGCggg-CGCCGc -3'
miRNA:   3'- -CGGC---GACCGGGc--------GCGCGagaaGCGGC- -5'
23746 3' -63.5 NC_005261.1 + 16373 0.66 0.576618
Target:  5'- cGCCGCcuucuccgugGGCCuCGC-CGUcgUCgUCGCCGg -3'
miRNA:   3'- -CGGCGa---------CCGG-GCGcGCG--AGaAGCGGC- -5'
23746 3' -63.5 NC_005261.1 + 125943 0.66 0.576618
Target:  5'- aGCCGCUGGCgCGgGguCGCacggcagcaCUUCGCuCGg -3'
miRNA:   3'- -CGGCGACCGgGCgC--GCGa--------GAAGCG-GC- -5'
23746 3' -63.5 NC_005261.1 + 133599 0.66 0.576618
Target:  5'- cGCUGCUcacGGCCCaccuCGCGCUgg-CGCUGu -3'
miRNA:   3'- -CGGCGA---CCGGGc---GCGCGAgaaGCGGC- -5'
23746 3' -63.5 NC_005261.1 + 84365 0.66 0.576618
Target:  5'- aGgCGCc-GCCCGCGgGCUCggccucggcCGCCGc -3'
miRNA:   3'- -CgGCGacCGGGCGCgCGAGaa-------GCGGC- -5'
23746 3' -63.5 NC_005261.1 + 47628 0.66 0.576618
Target:  5'- gGCCGC-GGCcgCCGCGCGCaccgCGUCc -3'
miRNA:   3'- -CGGCGaCCG--GGCGCGCGagaaGCGGc -5'
23746 3' -63.5 NC_005261.1 + 2717 0.66 0.576618
Target:  5'- gGCCcCUGGCCCcgGCcgacuuGCGCUUg-CGCCGc -3'
miRNA:   3'- -CGGcGACCGGG--CG------CGCGAGaaGCGGC- -5'
23746 3' -63.5 NC_005261.1 + 21220 0.66 0.575651
Target:  5'- gGCCGCgacggcgGGCCCGUcggcugGCGgCUUUUCagggcguGCCGc -3'
miRNA:   3'- -CGGCGa------CCGGGCG------CGC-GAGAAG-------CGGC- -5'
23746 3' -63.5 NC_005261.1 + 109192 0.66 0.572753
Target:  5'- cGCCGCgucgGGCgUGCGCaggcGCUCguaggcgcggcaCGCCGc -3'
miRNA:   3'- -CGGCGa---CCGgGCGCG----CGAGaa----------GCGGC- -5'
23746 3' -63.5 NC_005261.1 + 85169 0.66 0.566968
Target:  5'- gGCCGCguacGcGUCCGagaaGCGCUUcacggCGCCGa -3'
miRNA:   3'- -CGGCGa---C-CGGGCg---CGCGAGaa---GCGGC- -5'
23746 3' -63.5 NC_005261.1 + 113536 0.66 0.566968
Target:  5'- aGCCgGCUcgGGgCCGUGCGCg---CGCUGg -3'
miRNA:   3'- -CGG-CGA--CCgGGCGCGCGagaaGCGGC- -5'
23746 3' -63.5 NC_005261.1 + 105908 0.66 0.566968
Target:  5'- gGgCGCgGGCCgcuCGCGCGCgcccaCGCCGc -3'
miRNA:   3'- -CgGCGaCCGG---GCGCGCGagaa-GCGGC- -5'
23746 3' -63.5 NC_005261.1 + 75573 0.66 0.566968
Target:  5'- gGgCGCUGGgCgGCggcgcgGCGCUCgcgcgCGCCGc -3'
miRNA:   3'- -CgGCGACCgGgCG------CGCGAGaa---GCGGC- -5'
23746 3' -63.5 NC_005261.1 + 133302 0.66 0.566968
Target:  5'- gGCCGCcaaggacgacUGGCUgcuCGCGCaGCUCc-UGCCGg -3'
miRNA:   3'- -CGGCG----------ACCGG---GCGCG-CGAGaaGCGGC- -5'
23746 3' -63.5 NC_005261.1 + 84588 0.66 0.566968
Target:  5'- gGCCGuCUGcGCCaGCGCGC-CgUUGCUGc -3'
miRNA:   3'- -CGGC-GAC-CGGgCGCGCGaGaAGCGGC- -5'
23746 3' -63.5 NC_005261.1 + 33527 0.66 0.566968
Target:  5'- aCCGCUGGCCCcgggagcaccagGgGCGCcagCccCGCCa -3'
miRNA:   3'- cGGCGACCGGG------------CgCGCGa--GaaGCGGc -5'
23746 3' -63.5 NC_005261.1 + 86835 0.66 0.566968
Target:  5'- gGCCGCcaucaccgaGGCCaGCcgGCGCUCaaCGCCGc -3'
miRNA:   3'- -CGGCGa--------CCGGgCG--CGCGAGaaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.