miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23746 5' -56.9 NC_005261.1 + 32475 0.66 0.885488
Target:  5'- --gGACucGgGCUUCCCgGGGCCGGc -3'
miRNA:   3'- cagCUGcuCaUGAAGGGgCUCGGCCu -5'
23746 5' -56.9 NC_005261.1 + 105890 0.66 0.885488
Target:  5'- -aCGAuCGAGcACaUCUCCGGGCgCGGGc -3'
miRNA:   3'- caGCU-GCUCaUGaAGGGGCUCG-GCCU- -5'
23746 5' -56.9 NC_005261.1 + 32627 0.66 0.885488
Target:  5'- -aCGACGAGccggGCUcgCCCUGgAGCgGGGc -3'
miRNA:   3'- caGCUGCUCa---UGAa-GGGGC-UCGgCCU- -5'
23746 5' -56.9 NC_005261.1 + 23808 0.66 0.878532
Target:  5'- -cCGGCuGGGgcggGCUUgCCCCGGGCgGGc -3'
miRNA:   3'- caGCUG-CUCa---UGAA-GGGGCUCGgCCu -5'
23746 5' -56.9 NC_005261.1 + 23865 0.66 0.878532
Target:  5'- -cCGGCuGGGgcggGCUUgCCCCGGGCgGGc -3'
miRNA:   3'- caGCUG-CUCa---UGAA-GGGGCUCGgCCu -5'
23746 5' -56.9 NC_005261.1 + 49302 0.66 0.863227
Target:  5'- -gCGGCG-GUgagcgccGCgcagCCCuCGAGCCGGAa -3'
miRNA:   3'- caGCUGCuCA-------UGaa--GGG-GCUCGGCCU- -5'
23746 5' -56.9 NC_005261.1 + 33781 0.66 0.8486
Target:  5'- -gCGGCGAGcGCUgggCCCCGcGCgGGc -3'
miRNA:   3'- caGCUGCUCaUGAa--GGGGCuCGgCCu -5'
23746 5' -56.9 NC_005261.1 + 17294 0.66 0.8486
Target:  5'- -cCGACGAG-GCUauauaCCCG-GCCGGGg -3'
miRNA:   3'- caGCUGCUCaUGAag---GGGCuCGGCCU- -5'
23746 5' -56.9 NC_005261.1 + 24268 0.66 0.8486
Target:  5'- -gCGGgGAGgggGCUUgCCCGGGUgGGGg -3'
miRNA:   3'- caGCUgCUCa--UGAAgGGGCUCGgCCU- -5'
23746 5' -56.9 NC_005261.1 + 63110 0.67 0.840618
Target:  5'- -gCGcACGGGUcCUccacgagcUCCCCGGuGCCGGGg -3'
miRNA:   3'- caGC-UGCUCAuGA--------AGGGGCU-CGGCCU- -5'
23746 5' -56.9 NC_005261.1 + 34316 0.67 0.832451
Target:  5'- -cCGACGGGgagGCcgaggggCCCCaagGGGCCGGGg -3'
miRNA:   3'- caGCUGCUCa--UGaa-----GGGG---CUCGGCCU- -5'
23746 5' -56.9 NC_005261.1 + 98669 0.67 0.832451
Target:  5'- --aGGCGAGggcggGCUcCgCCgGGGCCGGAg -3'
miRNA:   3'- cagCUGCUCa----UGAaG-GGgCUCGGCCU- -5'
23746 5' -56.9 NC_005261.1 + 117086 0.67 0.832451
Target:  5'- cUCGGCGAGUACUcgaucaugCuCCCGAcGCgCGGc -3'
miRNA:   3'- cAGCUGCUCAUGAa-------G-GGGCU-CG-GCCu -5'
23746 5' -56.9 NC_005261.1 + 90756 0.67 0.832451
Target:  5'- -gCG-CGGG-ACUUCCCCGAGgCCGc- -3'
miRNA:   3'- caGCuGCUCaUGAAGGGGCUC-GGCcu -5'
23746 5' -56.9 NC_005261.1 + 127683 0.68 0.798065
Target:  5'- -gCGGCGGccGCUgCCCCGGcggcGCCGGAg -3'
miRNA:   3'- caGCUGCUcaUGAaGGGGCU----CGGCCU- -5'
23746 5' -56.9 NC_005261.1 + 77202 0.68 0.789079
Target:  5'- --aGGCGAGcGCggugUUCCCGcuGGCCGGGg -3'
miRNA:   3'- cagCUGCUCaUGa---AGGGGC--UCGGCCU- -5'
23746 5' -56.9 NC_005261.1 + 65791 0.68 0.789079
Target:  5'- -gCGGCGGGaACaUCCgCGGGUCGGGg -3'
miRNA:   3'- caGCUGCUCaUGaAGGgGCUCGGCCU- -5'
23746 5' -56.9 NC_005261.1 + 38661 0.68 0.779955
Target:  5'- -gCGGCGGGUGCgggCCCGGGCCc-- -3'
miRNA:   3'- caGCUGCUCAUGaagGGGCUCGGccu -5'
23746 5' -56.9 NC_005261.1 + 134633 0.68 0.760379
Target:  5'- cGUCGgaggagaGCGAGcccagACccgCCCCGAGCCGcGAa -3'
miRNA:   3'- -CAGC-------UGCUCa----UGaa-GGGGCUCGGC-CU- -5'
23746 5' -56.9 NC_005261.1 + 53010 0.69 0.732554
Target:  5'- cGUCGGCGcagcucgccAGcGCUUCCgCGGcGCCGGGg -3'
miRNA:   3'- -CAGCUGC---------UCaUGAAGGgGCU-CGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.