miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 53562 0.65 0.566919
Target:  5'- cGCGgCCCaggcgcacuagcggCCGC-GGGC--CGGCGGCGc -3'
miRNA:   3'- -CGCgGGG--------------GGCGaCCUGuuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 121983 0.66 0.564055
Target:  5'- aGCGCCgCCCaGCUGGcggaggucaugguugGCAuCaGCGGCc -3'
miRNA:   3'- -CGCGGgGGG-CGACC---------------UGUuGcCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 4884 0.66 0.560243
Target:  5'- cCGCCUCagCCGCggccgccucGGCuuCGGCGGCGg -3'
miRNA:   3'- cGCGGGG--GGCGac-------CUGuuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 131575 0.66 0.560243
Target:  5'- gGCuGCCCCCCGCgacGGcCGaggccuACGcGCGcGCGc -3'
miRNA:   3'- -CG-CGGGGGGCGa--CCuGU------UGC-CGC-CGC- -5'
23747 3' -64.1 NC_005261.1 + 100259 0.66 0.560243
Target:  5'- -aGCCCCCaGUcGGcGCGcCGGUGGCGc -3'
miRNA:   3'- cgCGGGGGgCGaCC-UGUuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 102968 0.66 0.560243
Target:  5'- gGCGCCgcgggcuccgCCgCCGCgcgcGAC-ACGGCGGCc -3'
miRNA:   3'- -CGCGG----------GG-GGCGac--CUGuUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 110787 0.66 0.560243
Target:  5'- aCGUgCUCCGggGGACGGCGGgcgaggaGGCGg -3'
miRNA:   3'- cGCGgGGGGCgaCCUGUUGCCg------CCGC- -5'
23747 3' -64.1 NC_005261.1 + 121382 0.66 0.559291
Target:  5'- gGCGCCCC-------GCGGCGGCGGCGc -3'
miRNA:   3'- -CGCGGGGggcgaccUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 110920 0.66 0.558339
Target:  5'- gGUGUUCCUgccgCGCUGGGCAccgagcgccgccCGGCGGCc -3'
miRNA:   3'- -CGCGGGGG----GCGACCUGUu-----------GCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 79898 0.66 0.554538
Target:  5'- cGCGCUCCuuGUUuugcagcaggcaccaGGACGuggccaGGCGGCu -3'
miRNA:   3'- -CGCGGGGggCGA---------------CCUGUug----CCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 100086 0.66 0.550744
Target:  5'- cGCGCCCCucgccgccgCCGCUGccgccgccCAGCGGCGcccGCa -3'
miRNA:   3'- -CGCGGGG---------GGCGACcu------GUUGCCGC---CGc -5'
23747 3' -64.1 NC_005261.1 + 126553 0.66 0.550744
Target:  5'- cGCGCCgCCgucgcgcgcaaaUGCUGcaGCAGCGcGCGGCa -3'
miRNA:   3'- -CGCGGgGG------------GCGACc-UGUUGC-CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 2548 0.66 0.550744
Target:  5'- aGCGCCgCggCGCUGGGCGcggGCGuGUGGUa -3'
miRNA:   3'- -CGCGGgGg-GCGACCUGU---UGC-CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 3147 0.66 0.550744
Target:  5'- cCGUCCCcguCCGa-GGcccCGGCGGCGGCGg -3'
miRNA:   3'- cGCGGGG---GGCgaCCu--GUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 76311 0.66 0.550744
Target:  5'- cGUGCcgcuguucaCCUCCGC-GGuguaAGCGGCGGCa -3'
miRNA:   3'- -CGCG---------GGGGGCGaCCug--UUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 88740 0.66 0.550744
Target:  5'- aGgGCCagCUGgUGGACGccAUGGUGGCGg -3'
miRNA:   3'- -CgCGGggGGCgACCUGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 87993 0.66 0.549797
Target:  5'- cGCGCCggcuccucCCCCgGC-GGGCccguuaaAGCGGCcGGCGg -3'
miRNA:   3'- -CGCGG--------GGGG-CGaCCUG-------UUGCCG-CCGC- -5'
23747 3' -64.1 NC_005261.1 + 74468 0.66 0.545069
Target:  5'- cCGCCCCCgGCgcggcgugccUGGGCGggAUcucggcgcucuucggGGCGGCGc -3'
miRNA:   3'- cGCGGGGGgCG----------ACCUGU--UG---------------CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 106852 0.66 0.541295
Target:  5'- -aGCCCgCCGcCUGGGgGGCgGGCGuccGCGg -3'
miRNA:   3'- cgCGGGgGGC-GACCUgUUG-CCGC---CGC- -5'
23747 3' -64.1 NC_005261.1 + 109859 0.66 0.541295
Target:  5'- gGCGgCUCCUGg-GGGCAGCGG-GGCc -3'
miRNA:   3'- -CGCgGGGGGCgaCCUGUUGCCgCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.