miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 53562 0.65 0.566919
Target:  5'- cGCGgCCCaggcgcacuagcggCCGC-GGGC--CGGCGGCGc -3'
miRNA:   3'- -CGCgGGG--------------GGCGaCCUGuuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 117356 0.66 0.512373
Target:  5'- gGCGCCgCCCGCaaggccgcccuccUGGAggcgcgcugcuuCGGCGG-GGCGc -3'
miRNA:   3'- -CGCGGgGGGCG-------------ACCU------------GUUGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 32302 0.66 0.513296
Target:  5'- gGCGCcgCCCCCGCcGccgccGCGGCcGCGGCGc -3'
miRNA:   3'- -CGCG--GGGGGCGaCc----UGUUGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 99871 0.66 0.513296
Target:  5'- cGCGCCgCCgCCGCUcGGcGCGAgGGCGuuGa -3'
miRNA:   3'- -CGCGG-GG-GGCGA-CC-UGUUgCCGCcgC- -5'
23747 3' -64.1 NC_005261.1 + 131681 0.66 0.513296
Target:  5'- uGCGaCCgCCCugcgcgcggCGCUGGACcGCcucgagagccaGGCGGCGc -3'
miRNA:   3'- -CGC-GG-GGG---------GCGACCUGuUG-----------CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 34700 0.66 0.513296
Target:  5'- uGgGCCCCUCGCaccucGAgccuCAGCGGuCGGCGc -3'
miRNA:   3'- -CgCGGGGGGCGac---CU----GUUGCC-GCCGC- -5'
23747 3' -64.1 NC_005261.1 + 34103 0.66 0.513296
Target:  5'- gGCGCCCaaccugCCCGCUGuGCAA-GGCGcccguGCGg -3'
miRNA:   3'- -CGCGGG------GGGCGACcUGUUgCCGC-----CGC- -5'
23747 3' -64.1 NC_005261.1 + 75865 0.66 0.513296
Target:  5'- gGCGgCCCCgacggCGCcgUGGGCGcgcGCaGCGGCGa -3'
miRNA:   3'- -CGCgGGGG-----GCG--ACCUGU---UGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 62299 0.66 0.522567
Target:  5'- -gGCgCCgCGC-GGGCGcGCGGCGGCc -3'
miRNA:   3'- cgCGgGGgGCGaCCUGU-UGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 101121 0.66 0.522567
Target:  5'- gGCGCCcucgugguCCUCGCgcgaGGCugccgcGCGGCGGCGc -3'
miRNA:   3'- -CGCGG--------GGGGCGac--CUGu-----UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 69538 0.66 0.513296
Target:  5'- gGCGCUggcgCgCgCGCUGGG-GACGGCGGCc -3'
miRNA:   3'- -CGCGG----GgG-GCGACCUgUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 88345 0.66 0.513296
Target:  5'- gGCGCCCCgCCGCcGcGGCGuucacaucggaACGGcCGaGCGc -3'
miRNA:   3'- -CGCGGGG-GGCGaC-CUGU-----------UGCC-GC-CGC- -5'
23747 3' -64.1 NC_005261.1 + 43622 0.66 0.522567
Target:  5'- aGUGCUUCgUGCugUGGGCGcccguguggcGCGGCGGUGa -3'
miRNA:   3'- -CGCGGGGgGCG--ACCUGU----------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 120615 0.66 0.51145
Target:  5'- gGCGCCguggggcUCCUGCUGGugGcggcccugugccuGCGGCgcaaGGCGc -3'
miRNA:   3'- -CGCGG-------GGGGCGACCugU-------------UGCCG----CCGC- -5'
23747 3' -64.1 NC_005261.1 + 67142 0.66 0.513296
Target:  5'- cGCGgCgCCCGUUuuauacccacGCGGCGGCGGCGu -3'
miRNA:   3'- -CGCgGgGGGCGAcc--------UGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 52454 0.66 0.522567
Target:  5'- -gGUCCCCgGCgcgcgucaGGAUGcgguuGCGGCGGCa -3'
miRNA:   3'- cgCGGGGGgCGa-------CCUGU-----UGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 136435 0.66 0.522567
Target:  5'- -gGCCCCCuCGCgggcgucgcagGGGCAcGCGGCaGCc -3'
miRNA:   3'- cgCGGGGG-GCGa----------CCUGU-UGCCGcCGc -5'
23747 3' -64.1 NC_005261.1 + 43758 0.66 0.513296
Target:  5'- cGUGCCCCUgaaggUGCUcgugGGGCGGCGcGCGGa- -3'
miRNA:   3'- -CGCGGGGG-----GCGA----CCUGUUGC-CGCCgc -5'
23747 3' -64.1 NC_005261.1 + 68812 0.66 0.513296
Target:  5'- cGCGgaCCCacaaCGcCUGGGCcgUGGCGGCc -3'
miRNA:   3'- -CGCg-GGGg---GC-GACCUGuuGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 99514 0.66 0.519779
Target:  5'- aGgGCCCgCCCGUUgcgugcaccgucgaGGGCGcguccaGGCGGCGc -3'
miRNA:   3'- -CgCGGG-GGGCGA--------------CCUGUug----CCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.