miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 274 0.66 0.541295
Target:  5'- gGCGgCUgCgGCgGcGGCuGCGGCGGCGg -3'
miRNA:   3'- -CGCgGGgGgCGaC-CUGuUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 99514 0.66 0.519779
Target:  5'- aGgGCCCgCCCGUUgcgugcaccgucgaGGGCGcguccaGGCGGCGc -3'
miRNA:   3'- -CgCGGG-GGGCGA--------------CCUGUug----CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 88345 0.66 0.513296
Target:  5'- gGCGCCCCgCCGCcGcGGCGuucacaucggaACGGcCGaGCGc -3'
miRNA:   3'- -CGCGGGG-GGCGaC-CUGU-----------UGCC-GC-CGC- -5'
23747 3' -64.1 NC_005261.1 + 66972 0.66 0.531901
Target:  5'- cCGCa-CCUGCUGGAagaagcugaaCAGCGcGCGGUGg -3'
miRNA:   3'- cGCGggGGGCGACCU----------GUUGC-CGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 52454 0.66 0.522567
Target:  5'- -gGUCCCCgGCgcgcgucaGGAUGcgguuGCGGCGGCa -3'
miRNA:   3'- cgCGGGGGgCGa-------CCUGU-----UGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 106852 0.66 0.541295
Target:  5'- -aGCCCgCCGcCUGGGgGGCgGGCGuccGCGg -3'
miRNA:   3'- cgCGGGgGGC-GACCUgUUG-CCGC---CGC- -5'
23747 3' -64.1 NC_005261.1 + 136435 0.66 0.522567
Target:  5'- -gGCCCCCuCGCgggcgucgcagGGGCAcGCGGCaGCc -3'
miRNA:   3'- cgCGGGGG-GCGa----------CCUGU-UGCCGcCGc -5'
23747 3' -64.1 NC_005261.1 + 118590 0.66 0.523498
Target:  5'- cGCGCCgCCgCCGC-GGAgcucgcgcugucggcCGuugcccuggccgccGCGGCGGCGc -3'
miRNA:   3'- -CGCGG-GG-GGCGaCCU---------------GU--------------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 101121 0.66 0.522567
Target:  5'- gGCGCCcucgugguCCUCGCgcgaGGCugccgcGCGGCGGCGc -3'
miRNA:   3'- -CGCGG--------GGGGCGac--CUGu-----UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 47881 0.66 0.531901
Target:  5'- aGCGUCCgg-GgaGcGGCGGCGGCGGCGc -3'
miRNA:   3'- -CGCGGGgggCgaC-CUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 69538 0.66 0.513296
Target:  5'- gGCGCUggcgCgCgCGCUGGG-GACGGCGGCc -3'
miRNA:   3'- -CGCGG----GgG-GCGACCUgUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 34700 0.66 0.513296
Target:  5'- uGgGCCCCUCGCaccucGAgccuCAGCGGuCGGCGc -3'
miRNA:   3'- -CgCGGGGGGCGac---CU----GUUGCC-GCCGC- -5'
23747 3' -64.1 NC_005261.1 + 117356 0.66 0.512373
Target:  5'- gGCGCCgCCCGCaaggccgcccuccUGGAggcgcgcugcuuCGGCGG-GGCGc -3'
miRNA:   3'- -CGCGGgGGGCG-------------ACCU------------GUUGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 9602 0.66 0.530965
Target:  5'- ---aCCCCCGCcucgggcccggggUGGGCAgGCGGgGGUGg -3'
miRNA:   3'- cgcgGGGGGCG-------------ACCUGU-UGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 121485 0.66 0.531901
Target:  5'- cCGgCUgCCGCcacgGGGCGGCGG-GGCGg -3'
miRNA:   3'- cGCgGGgGGCGa---CCUGUUGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 103465 0.66 0.516996
Target:  5'- cGCGCCCgucgccagggcgUCCaGCUGGcgcaagacgucgucgGCGccgcggACGGCGGCGu -3'
miRNA:   3'- -CGCGGG------------GGG-CGACC---------------UGU------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 180 0.66 0.531901
Target:  5'- gGCGCCCCUgGUgcucccgGGGcCAGCGGUGcCGc -3'
miRNA:   3'- -CGCGGGGGgCGa------CCU-GUUGCCGCcGC- -5'
23747 3' -64.1 NC_005261.1 + 310 0.66 0.541295
Target:  5'- gGCGgCUgCgGCgGcGGCuGCGGCGGCGg -3'
miRNA:   3'- -CGCgGGgGgCGaC-CUGuUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 99871 0.66 0.513296
Target:  5'- cGCGCCgCCgCCGCUcGGcGCGAgGGCGuuGa -3'
miRNA:   3'- -CGCGG-GG-GGCGA-CC-UGUUgCCGCcgC- -5'
23747 3' -64.1 NC_005261.1 + 68812 0.66 0.513296
Target:  5'- cGCGgaCCCacaaCGcCUGGGCcgUGGCGGCc -3'
miRNA:   3'- -CGCg-GGGg---GC-GACCUGuuGCCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.