miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 53707 0.66 0.541295
Target:  5'- gGCGCCgCgCGCcgcGGcCAGCuGCGGCGc -3'
miRNA:   3'- -CGCGGgGgGCGa--CCuGUUGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 43758 0.66 0.513296
Target:  5'- cGUGCCCCUgaaggUGCUcgugGGGCGGCGcGCGGa- -3'
miRNA:   3'- -CGCGGGGG-----GCGA----CCUGUUGC-CGCCgc -5'
23747 3' -64.1 NC_005261.1 + 133152 0.66 0.538471
Target:  5'- cGCGCUCgCCGCcGucggcgucgccgccGACAACcGCGGCGc -3'
miRNA:   3'- -CGCGGGgGGCGaC--------------CUGUUGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 127770 0.66 0.535652
Target:  5'- gGCGCgaagacgCCCgGCUGcucgagcggcgggccGGCGccGCGGCGGCGg -3'
miRNA:   3'- -CGCGg------GGGgCGAC---------------CUGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 126553 0.66 0.550744
Target:  5'- cGCGCCgCCgucgcgcgcaaaUGCUGcaGCAGCGcGCGGCa -3'
miRNA:   3'- -CGCGGgGG------------GCGACc-UGUUGC-CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 116624 0.66 0.522567
Target:  5'- cCGCCCgCCCGCc-GACGAgGGCgaGGCc -3'
miRNA:   3'- cGCGGG-GGGCGacCUGUUgCCG--CCGc -5'
23747 3' -64.1 NC_005261.1 + 310 0.66 0.541295
Target:  5'- gGCGgCUgCgGCgGcGGCuGCGGCGGCGg -3'
miRNA:   3'- -CGCgGGgGgCGaC-CUGuUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 76311 0.66 0.550744
Target:  5'- cGUGCcgcuguucaCCUCCGC-GGuguaAGCGGCGGCa -3'
miRNA:   3'- -CGCG---------GGGGGCGaCCug--UUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 66600 0.66 0.541295
Target:  5'- uGCGCgCgagCUGCUGGAUGGCGcGCGuGCGc -3'
miRNA:   3'- -CGCGgGg--GGCGACCUGUUGC-CGC-CGC- -5'
23747 3' -64.1 NC_005261.1 + 43622 0.66 0.522567
Target:  5'- aGUGCUUCgUGCugUGGGCGcccguguggcGCGGCGGUGa -3'
miRNA:   3'- -CGCGGGGgGCG--ACCUGU----------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 68812 0.66 0.513296
Target:  5'- cGCGgaCCCacaaCGcCUGGGCcgUGGCGGCc -3'
miRNA:   3'- -CGCg-GGGg---GC-GACCUGuuGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 99871 0.66 0.513296
Target:  5'- cGCGCCgCCgCCGCUcGGcGCGAgGGCGuuGa -3'
miRNA:   3'- -CGCGG-GG-GGCGA-CC-UGUUgCCGCcgC- -5'
23747 3' -64.1 NC_005261.1 + 131681 0.66 0.513296
Target:  5'- uGCGaCCgCCCugcgcgcggCGCUGGACcGCcucgagagccaGGCGGCGc -3'
miRNA:   3'- -CGC-GG-GGG---------GCGACCUGuUG-----------CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 132875 0.66 0.541295
Target:  5'- uGCGCCUgCCCuucuucggcaaGCcGGGCGccGCgGGCGGCGc -3'
miRNA:   3'- -CGCGGG-GGG-----------CGaCCUGU--UG-CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 62299 0.66 0.522567
Target:  5'- -gGCgCCgCGC-GGGCGcGCGGCGGCc -3'
miRNA:   3'- cgCGgGGgGCGaCCUGU-UGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 88740 0.66 0.550744
Target:  5'- aGgGCCagCUGgUGGACGccAUGGUGGCGg -3'
miRNA:   3'- -CgCGGggGGCgACCUGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 22491 0.66 0.531901
Target:  5'- aGCGCgCCCgCGggGGGCcACG-CGGCGu -3'
miRNA:   3'- -CGCGgGGG-GCgaCCUGuUGCcGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 110882 0.66 0.541295
Target:  5'- cGCuGCCCCgucucgCgGCUGGGCGACuGCGacGCGa -3'
miRNA:   3'- -CG-CGGGG------GgCGACCUGUUGcCGC--CGC- -5'
23747 3' -64.1 NC_005261.1 + 180 0.66 0.531901
Target:  5'- gGCGCCCCUgGUgcucccgGGGcCAGCGGUGcCGc -3'
miRNA:   3'- -CGCGGGGGgCGa------CCU-GUUGCCGCcGC- -5'
23747 3' -64.1 NC_005261.1 + 90220 0.66 0.531901
Target:  5'- aGCGCCCUCgCGCggcGGGCG--GGCGcGCc -3'
miRNA:   3'- -CGCGGGGG-GCGa--CCUGUugCCGC-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.