miRNA display CGI


Results 61 - 80 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 57836 0.66 0.541295
Target:  5'- aCGUgCUCCGC-GGGCGcgGGCGGCa -3'
miRNA:   3'- cGCGgGGGGCGaCCUGUugCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 121485 0.66 0.531901
Target:  5'- cCGgCUgCCGCcacgGGGCGGCGG-GGCGg -3'
miRNA:   3'- cGCgGGgGGCGa---CCUGUUGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 4884 0.66 0.560243
Target:  5'- cCGCCUCagCCGCggccgccucGGCuuCGGCGGCGg -3'
miRNA:   3'- cGCGGGG--GGCGac-------CUGuuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 69172 0.66 0.531901
Target:  5'- cGCGCCCCuuGacgaGGGCAccgucGCGgacGCGGCc -3'
miRNA:   3'- -CGCGGGGggCga--CCUGU-----UGC---CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 132875 0.66 0.541295
Target:  5'- uGCGCCUgCCCuucuucggcaaGCcGGGCGccGCgGGCGGCGc -3'
miRNA:   3'- -CGCGGG-GGG-----------CGaCCUGU--UG-CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 88740 0.66 0.550744
Target:  5'- aGgGCCagCUGgUGGACGccAUGGUGGCGg -3'
miRNA:   3'- -CgCGGggGGCgACCUGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 49226 0.67 0.468042
Target:  5'- gGCGCCCagCGCgcgcaGGuCGgccgccgccGCGGCGGCGu -3'
miRNA:   3'- -CGCGGGggGCGa----CCuGU---------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 78854 0.67 0.468042
Target:  5'- gGCGCCCgCCGCcGGAgcGCGaGCcGCGu -3'
miRNA:   3'- -CGCGGGgGGCGaCCUguUGC-CGcCGC- -5'
23747 3' -64.1 NC_005261.1 + 136830 0.67 0.476041
Target:  5'- gGCGCCCCCgCGCgugaGGuagaGCAugaacuuGCGGCagGGCa -3'
miRNA:   3'- -CGCGGGGG-GCGa---CC----UGU-------UGCCG--CCGc -5'
23747 3' -64.1 NC_005261.1 + 74902 0.67 0.476934
Target:  5'- gGCGgCCCgCGCUGGccgcGCGGgGGagGGCGa -3'
miRNA:   3'- -CGCgGGGgGCGACC----UGUUgCCg-CCGC- -5'
23747 3' -64.1 NC_005261.1 + 2668 0.67 0.476934
Target:  5'- --uCCCgCCGCgcuggGGACc-CGGCGGCGc -3'
miRNA:   3'- cgcGGGgGGCGa----CCUGuuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 46073 0.67 0.476934
Target:  5'- gGCGCCgCCUCGUggccGGACAcgagcacguACGGcCGGgGg -3'
miRNA:   3'- -CGCGG-GGGGCGa---CCUGU---------UGCC-GCCgC- -5'
23747 3' -64.1 NC_005261.1 + 108000 0.67 0.476934
Target:  5'- -aGCCCgCCGUcGGGCAGCcccagcaGCGGCa -3'
miRNA:   3'- cgCGGGgGGCGaCCUGUUGc------CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 109530 0.67 0.468042
Target:  5'- cGCGCCCgCCGCgGGcccccucgccACAACcgccGCGGCc -3'
miRNA:   3'- -CGCGGGgGGCGaCC----------UGUUGc---CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 105145 0.67 0.476934
Target:  5'- cGCGCagguCCUCGC-GGcuCGAgGGCGGCGu -3'
miRNA:   3'- -CGCGg---GGGGCGaCCu-GUUgCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 96098 0.67 0.475149
Target:  5'- gGCGCaaCCUgcuugucgggacgUCGCUGGccauggucgaccuGCGGCGGCGGCa -3'
miRNA:   3'- -CGCG--GGG-------------GGCGACC-------------UGUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 103186 0.67 0.476934
Target:  5'- cUGCaCgCCCGC-GGuCAcgcGCGGCGGCGc -3'
miRNA:   3'- cGCG-GgGGGCGaCCuGU---UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 20651 0.67 0.468042
Target:  5'- cCGCCCgCaCCGCcgGuGGCGGCaGCGGCa -3'
miRNA:   3'- cGCGGG-G-GGCGa-C-CUGUUGcCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 68721 0.67 0.476934
Target:  5'- -gGCCCUCaCGCggcGGGCGcCGGCGGg- -3'
miRNA:   3'- cgCGGGGG-GCGa--CCUGUuGCCGCCgc -5'
23747 3' -64.1 NC_005261.1 + 103296 0.67 0.476934
Target:  5'- cGCGCagCCCCGCgaagcccuGCAGCGGCaGCa -3'
miRNA:   3'- -CGCGg-GGGGCGacc-----UGUUGCCGcCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.