Results 21 - 40 of 377 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 15129 | 0.76 | 0.128853 |
Target: 5'- gGCGUcgcgacuccuucgCCCCCGCcguccgcggugggggUGGGCGuaGCGGCGGCGg -3' miRNA: 3'- -CGCG-------------GGGGGCG---------------ACCUGU--UGCCGCCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 46492 | 0.75 | 0.159279 |
Target: 5'- gGCGCCCUCCGCgGGGCGcagccCGGCGucGCGc -3' miRNA: 3'- -CGCGGGGGGCGaCCUGUu----GCCGC--CGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 131903 | 0.75 | 0.159279 |
Target: 5'- gGCGCgCaCCCGCUGGACGGgcuuuuUGGCGcGCGc -3' miRNA: 3'- -CGCGgG-GGGCGACCUGUU------GCCGC-CGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 117968 | 0.75 | 0.16199 |
Target: 5'- cGCGCUCgCUGCcaUGGGCGcgcacaccggccugACGGCGGCGg -3' miRNA: 3'- -CGCGGGgGGCG--ACCUGU--------------UGCCGCCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 2637 | 0.75 | 0.167137 |
Target: 5'- gGgGCCCagcaCGCgggcGGGCAGCGGCGGCu -3' miRNA: 3'- -CgCGGGgg--GCGa---CCUGUUGCCGCCGc -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 60031 | 0.75 | 0.167137 |
Target: 5'- -aGCCCgCCGCcGucggcgccGACGGCGGCGGCGa -3' miRNA: 3'- cgCGGGgGGCGaC--------CUGUUGCCGCCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 131410 | 0.75 | 0.159279 |
Target: 5'- -aGCCCCCCGCcgcugccGGCAGCGGCgccGGCGc -3' miRNA: 3'- cgCGGGGGGCGac-----CUGUUGCCG---CCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 5459 | 0.75 | 0.158512 |
Target: 5'- aGCGCCCCCCcgagcagcccccGCUaucgcgcgcgccgggGGguagcuggggccgcgGCAGCGGCGGCGa -3' miRNA: 3'- -CGCGGGGGG------------CGA---------------CC---------------UGUUGCCGCCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 102137 | 0.75 | 0.156987 |
Target: 5'- cGCGUCCCaCCacgcgaugucgcgcaGCUGcGcCAGCGGCGGCGg -3' miRNA: 3'- -CGCGGGG-GG---------------CGAC-CuGUUGCCGCCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 4810 | 0.75 | 0.155476 |
Target: 5'- gGCGUcaacuuCCUCCGCguUGGGCGcagGCGGCGGCGu -3' miRNA: 3'- -CGCG------GGGGGCG--ACCUGU---UGCCGCCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 63062 | 0.75 | 0.151756 |
Target: 5'- aGCGCCgCgUCGCUGGcgcACAGCGGCGGg- -3' miRNA: 3'- -CGCGG-GgGGCGACC---UGUUGCCGCCgc -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 135001 | 0.75 | 0.151021 |
Target: 5'- gGCGCCCCUgGCgcggcGGGCccgcacgcggccGCGGCGGCGa -3' miRNA: 3'- -CGCGGGGGgCGa----CCUGu-----------UGCCGCCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 75447 | 0.75 | 0.149562 |
Target: 5'- aGCGCCUCCCaCgGGGCcaguuccaggcgccgGGCGGCGGCGc -3' miRNA: 3'- -CGCGGGGGGcGaCCUG---------------UUGCCGCCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 72439 | 0.75 | 0.148116 |
Target: 5'- uUGCCCCCgGCggGGGCGcccGCGGCGaGCGc -3' miRNA: 3'- cGCGGGGGgCGa-CCUGU---UGCCGC-CGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 75549 | 0.74 | 0.182594 |
Target: 5'- uGCGCguccugccggccauCCCCggggCGCUGGGCGGCGGCgcGGCGc -3' miRNA: 3'- -CGCG--------------GGGG----GCGACCUGUUGCCG--CCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 46215 | 0.74 | 0.177024 |
Target: 5'- cGCGCCgCUcgaaggCCGCgUGGACGagcgcgucgcaggccGCGGCGGCGg -3' miRNA: 3'- -CGCGG-GG------GGCG-ACCUGU---------------UGCCGCCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 20542 | 0.74 | 0.175341 |
Target: 5'- cCGCgCUCUGCUGGACgu-GGCGGCGg -3' miRNA: 3'- cGCGgGGGGCGACCUGuugCCGCCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 11901 | 0.74 | 0.174922 |
Target: 5'- cGCGCCCgCCGCgGGcccggcccggccgGCGGCuGCGGCGg -3' miRNA: 3'- -CGCGGGgGGCGaCC-------------UGUUGcCGCCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 93546 | 0.74 | 0.171195 |
Target: 5'- cGCGCCgCCCaguaGC-GGuCGACGGCGGUGc -3' miRNA: 3'- -CGCGG-GGGg---CGaCCuGUUGCCGCCGC- -5' |
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23747 | 3' | -64.1 | NC_005261.1 | + | 90876 | 0.74 | 0.183901 |
Target: 5'- cCGUCUgCgCGCUGGGCGACGGCauGGCGc -3' miRNA: 3'- cGCGGGgG-GCGACCUGUUGCCG--CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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