miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 75549 0.74 0.182594
Target:  5'- uGCGCguccugccggccauCCCCggggCGCUGGGCGGCGGCgcGGCGc -3'
miRNA:   3'- -CGCG--------------GGGG----GCGACCUGUUGCCG--CCGC- -5'
23747 3' -64.1 NC_005261.1 + 46215 0.74 0.177024
Target:  5'- cGCGCCgCUcgaaggCCGCgUGGACGagcgcgucgcaggccGCGGCGGCGg -3'
miRNA:   3'- -CGCGG-GG------GGCG-ACCUGU---------------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 20542 0.74 0.175341
Target:  5'- cCGCgCUCUGCUGGACgu-GGCGGCGg -3'
miRNA:   3'- cGCGgGGGGCGACCUGuugCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 11901 0.74 0.174922
Target:  5'- cGCGCCCgCCGCgGGcccggcccggccgGCGGCuGCGGCGg -3'
miRNA:   3'- -CGCGGGgGGCGaCC-------------UGUUGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 93546 0.74 0.171195
Target:  5'- cGCGCCgCCCaguaGC-GGuCGACGGCGGUGc -3'
miRNA:   3'- -CGCGG-GGGg---CGaCCuGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 127280 0.74 0.169968
Target:  5'- cCGCCCgCCGCggGGGCAGCccuccccgccggcuGGCGGUGg -3'
miRNA:   3'- cGCGGGgGGCGa-CCUGUUG--------------CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 56409 0.73 0.211332
Target:  5'- gGCGCCCUgCGCUucgcGGcGCAcccgccugcggagGCGGCGGCGc -3'
miRNA:   3'- -CGCGGGGgGCGA----CC-UGU-------------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 31669 0.73 0.211826
Target:  5'- cUGCCUgCgGCUGGccGCGgcGCGGCGGCGg -3'
miRNA:   3'- cGCGGGgGgCGACC--UGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 120348 0.73 0.211826
Target:  5'- cGCGUCUCCCugcGCUGGACGguGCGcGaCGGCGc -3'
miRNA:   3'- -CGCGGGGGG---CGACCUGU--UGC-C-GCCGC- -5'
23747 3' -64.1 NC_005261.1 + 94996 0.73 0.213812
Target:  5'- cGCGCgCCCCGCccugcgGGGCGggcuauaaagccgccGcCGGCGGCGc -3'
miRNA:   3'- -CGCGgGGGGCGa-----CCUGU---------------U-GCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 13058 0.73 0.216317
Target:  5'- cGCGCgCCCCUGCcGGGCGcguccGCcggcccgucggcgGGCGGCGg -3'
miRNA:   3'- -CGCG-GGGGGCGaCCUGU-----UG-------------CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 37745 0.73 0.216317
Target:  5'- uCGCCCCCCGC-GGGCGccgcgccgcccaaGCGcCGGCGc -3'
miRNA:   3'- cGCGGGGGGCGaCCUGU-------------UGCcGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 60229 0.73 0.210347
Target:  5'- gGCGCCCCcagggccgccuccgCCGCggcgGGA--GCGGCGGCc -3'
miRNA:   3'- -CGCGGGG--------------GGCGa---CCUguUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 59488 0.73 0.206931
Target:  5'- cGCGgCCgCCGCgc--CAGCGGCGGCGg -3'
miRNA:   3'- -CGCgGGgGGCGaccuGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 98575 0.73 0.206931
Target:  5'- cCGUCCUCCGCgggcucGGGCGAguaGGCGGCGc -3'
miRNA:   3'- cGCGGGGGGCGa-----CCUGUUg--CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 47453 0.73 0.202134
Target:  5'- gGCGCCCggCCCGCuugcgcgggggcUGGGCGAUGuCGGCGa -3'
miRNA:   3'- -CGCGGG--GGGCG------------ACCUGUUGCcGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 1539 0.73 0.199302
Target:  5'- cGCGCCgCCCGCaGGccagguacaccggccGCAGCGGCGcGCc -3'
miRNA:   3'- -CGCGGgGGGCGaCC---------------UGUUGCCGC-CGc -5'
23747 3' -64.1 NC_005261.1 + 137914 0.73 0.197433
Target:  5'- cGCGggCCCCGCgagcGGGCccggcuGCGGCGGCGg -3'
miRNA:   3'- -CGCggGGGGCGa---CCUGu-----UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 231 0.73 0.197433
Target:  5'- cGCGggCCCCGCgagcGGGCccggcuGCGGCGGCGg -3'
miRNA:   3'- -CGCggGGGGCGa---CCUGu-----UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 22735 0.73 0.216821
Target:  5'- aGCGCCagucgggCGCgGGGCGGCGGCGGCc -3'
miRNA:   3'- -CGCGGggg----GCGaCCUGUUGCCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.