miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 109785 0.76 0.141075
Target:  5'- gGCGUCCCggCCGCUGcuGCGACGGCcGGCGc -3'
miRNA:   3'- -CGCGGGG--GGCGACc-UGUUGCCG-CCGC- -5'
23747 3' -64.1 NC_005261.1 + 72439 0.75 0.148116
Target:  5'- uUGCCCCCgGCggGGGCGcccGCGGCGaGCGc -3'
miRNA:   3'- cGCGGGGGgCGa-CCUGU---UGCCGC-CGC- -5'
23747 3' -64.1 NC_005261.1 + 75447 0.75 0.149562
Target:  5'- aGCGCCUCCCaCgGGGCcaguuccaggcgccgGGCGGCGGCGc -3'
miRNA:   3'- -CGCGGGGGGcGaCCUG---------------UUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 135001 0.75 0.151021
Target:  5'- gGCGCCCCUgGCgcggcGGGCccgcacgcggccGCGGCGGCGa -3'
miRNA:   3'- -CGCGGGGGgCGa----CCUGu-----------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 63062 0.75 0.151756
Target:  5'- aGCGCCgCgUCGCUGGcgcACAGCGGCGGg- -3'
miRNA:   3'- -CGCGG-GgGGCGACC---UGUUGCCGCCgc -5'
23747 3' -64.1 NC_005261.1 + 4810 0.75 0.155476
Target:  5'- gGCGUcaacuuCCUCCGCguUGGGCGcagGCGGCGGCGu -3'
miRNA:   3'- -CGCG------GGGGGCG--ACCUGU---UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 102137 0.75 0.156987
Target:  5'- cGCGUCCCaCCacgcgaugucgcgcaGCUGcGcCAGCGGCGGCGg -3'
miRNA:   3'- -CGCGGGG-GG---------------CGAC-CuGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 5459 0.75 0.158512
Target:  5'- aGCGCCCCCCcgagcagcccccGCUaucgcgcgcgccgggGGguagcuggggccgcgGCAGCGGCGGCGa -3'
miRNA:   3'- -CGCGGGGGG------------CGA---------------CC---------------UGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 131903 0.75 0.159279
Target:  5'- gGCGCgCaCCCGCUGGACGGgcuuuuUGGCGcGCGc -3'
miRNA:   3'- -CGCGgG-GGGCGACCUGUU------GCCGC-CGC- -5'
23747 3' -64.1 NC_005261.1 + 46492 0.75 0.159279
Target:  5'- gGCGCCCUCCGCgGGGCGcagccCGGCGucGCGc -3'
miRNA:   3'- -CGCGGGGGGCGaCCUGUu----GCCGC--CGC- -5'
23747 3' -64.1 NC_005261.1 + 131410 0.75 0.159279
Target:  5'- -aGCCCCCCGCcgcugccGGCAGCGGCgccGGCGc -3'
miRNA:   3'- cgCGGGGGGCGac-----CUGUUGCCG---CCGC- -5'
23747 3' -64.1 NC_005261.1 + 117968 0.75 0.16199
Target:  5'- cGCGCUCgCUGCcaUGGGCGcgcacaccggccugACGGCGGCGg -3'
miRNA:   3'- -CGCGGGgGGCG--ACCUGU--------------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 2637 0.75 0.167137
Target:  5'- gGgGCCCagcaCGCgggcGGGCAGCGGCGGCu -3'
miRNA:   3'- -CgCGGGgg--GCGa---CCUGUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 60031 0.75 0.167137
Target:  5'- -aGCCCgCCGCcGucggcgccGACGGCGGCGGCGa -3'
miRNA:   3'- cgCGGGgGGCGaC--------CUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 127280 0.74 0.169968
Target:  5'- cCGCCCgCCGCggGGGCAGCccuccccgccggcuGGCGGUGg -3'
miRNA:   3'- cGCGGGgGGCGa-CCUGUUG--------------CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 93546 0.74 0.171195
Target:  5'- cGCGCCgCCCaguaGC-GGuCGACGGCGGUGc -3'
miRNA:   3'- -CGCGG-GGGg---CGaCCuGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 11901 0.74 0.174922
Target:  5'- cGCGCCCgCCGCgGGcccggcccggccgGCGGCuGCGGCGg -3'
miRNA:   3'- -CGCGGGgGGCGaCC-------------UGUUGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 20542 0.74 0.175341
Target:  5'- cCGCgCUCUGCUGGACgu-GGCGGCGg -3'
miRNA:   3'- cGCGgGGGGCGACCUGuugCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 46215 0.74 0.177024
Target:  5'- cGCGCCgCUcgaaggCCGCgUGGACGagcgcgucgcaggccGCGGCGGCGg -3'
miRNA:   3'- -CGCGG-GG------GGCG-ACCUGU---------------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 75549 0.74 0.182594
Target:  5'- uGCGCguccugccggccauCCCCggggCGCUGGGCGGCGGCgcGGCGc -3'
miRNA:   3'- -CGCG--------------GGGG----GCGACCUGUUGCCG--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.