miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 90876 0.74 0.183901
Target:  5'- cCGUCUgCgCGCUGGGCGACGGCauGGCGc -3'
miRNA:   3'- cGCGGGgG-GCGACCUGUUGCCG--CCGC- -5'
23747 3' -64.1 NC_005261.1 + 24376 0.74 0.183901
Target:  5'- gGUGCUCCCgG-UGGGCucguCGGCGGCGg -3'
miRNA:   3'- -CGCGGGGGgCgACCUGuu--GCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 124589 0.74 0.183901
Target:  5'- cGCGCUgaUCGUUGGGCGGCGuGCGGCa -3'
miRNA:   3'- -CGCGGggGGCGACCUGUUGC-CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 35078 0.74 0.187427
Target:  5'- cGCGCCCCCuCGCccucggagccgcGGugAGCGGCGaGCc -3'
miRNA:   3'- -CGCGGGGG-GCGa-----------CCugUUGCCGC-CGc -5'
23747 3' -64.1 NC_005261.1 + 74440 0.74 0.188318
Target:  5'- aGCGCCCCCCcgGCgGGGgGugGG-GGCGc -3'
miRNA:   3'- -CGCGGGGGG--CGaCCUgUugCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 52341 0.74 0.188765
Target:  5'- gGCGCCCgCCGCgcugccgccggagccGGAgcCcGCGGCGGCGg -3'
miRNA:   3'- -CGCGGGgGGCGa--------------CCU--GuUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 104074 0.73 0.197433
Target:  5'- aGCGCgUCCaGCUcggcGGACAggGCGGCGGCGc -3'
miRNA:   3'- -CGCGgGGGgCGA----CCUGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 231 0.73 0.197433
Target:  5'- cGCGggCCCCGCgagcGGGCccggcuGCGGCGGCGg -3'
miRNA:   3'- -CGCggGGGGCGa---CCUGu-----UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 137914 0.73 0.197433
Target:  5'- cGCGggCCCCGCgagcGGGCccggcuGCGGCGGCGg -3'
miRNA:   3'- -CGCggGGGGCGa---CCUGu-----UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 1539 0.73 0.199302
Target:  5'- cGCGCCgCCCGCaGGccagguacaccggccGCAGCGGCGcGCc -3'
miRNA:   3'- -CGCGGgGGGCGaCC---------------UGUUGCCGC-CGc -5'
23747 3' -64.1 NC_005261.1 + 47453 0.73 0.202134
Target:  5'- gGCGCCCggCCCGCuugcgcgggggcUGGGCGAUGuCGGCGa -3'
miRNA:   3'- -CGCGGG--GGGCG------------ACCUGUUGCcGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 98575 0.73 0.206931
Target:  5'- cCGUCCUCCGCgggcucGGGCGAguaGGCGGCGc -3'
miRNA:   3'- cGCGGGGGGCGa-----CCUGUUg--CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 59488 0.73 0.206931
Target:  5'- cGCGgCCgCCGCgc--CAGCGGCGGCGg -3'
miRNA:   3'- -CGCgGGgGGCGaccuGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 60229 0.73 0.210347
Target:  5'- gGCGCCCCcagggccgccuccgCCGCggcgGGA--GCGGCGGCc -3'
miRNA:   3'- -CGCGGGG--------------GGCGa---CCUguUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 56409 0.73 0.211332
Target:  5'- gGCGCCCUgCGCUucgcGGcGCAcccgccugcggagGCGGCGGCGc -3'
miRNA:   3'- -CGCGGGGgGCGA----CC-UGU-------------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 31669 0.73 0.211826
Target:  5'- cUGCCUgCgGCUGGccGCGgcGCGGCGGCGg -3'
miRNA:   3'- cGCGGGgGgCGACC--UGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 120348 0.73 0.211826
Target:  5'- cGCGUCUCCCugcGCUGGACGguGCGcGaCGGCGc -3'
miRNA:   3'- -CGCGGGGGG---CGACCUGU--UGC-C-GCCGC- -5'
23747 3' -64.1 NC_005261.1 + 94996 0.73 0.213812
Target:  5'- cGCGCgCCCCGCccugcgGGGCGggcuauaaagccgccGcCGGCGGCGc -3'
miRNA:   3'- -CGCGgGGGGCGa-----CCUGU---------------U-GCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 13058 0.73 0.216317
Target:  5'- cGCGCgCCCCUGCcGGGCGcguccGCcggcccgucggcgGGCGGCGg -3'
miRNA:   3'- -CGCG-GGGGGCGaCCUGU-----UG-------------CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 37745 0.73 0.216317
Target:  5'- uCGCCCCCCGC-GGGCGccgcgccgcccaaGCGcCGGCGc -3'
miRNA:   3'- cGCGGGGGGCGaCCUGU-------------UGCcGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.