miRNA display CGI


Results 61 - 80 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 88796 0.73 0.216821
Target:  5'- gGCGCCgCgCaGCaGGACGcCGGCGGCGg -3'
miRNA:   3'- -CGCGGgGgG-CGaCCUGUuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 22735 0.73 0.216821
Target:  5'- aGCGCCagucgggCGCgGGGCGGCGGCGGCc -3'
miRNA:   3'- -CGCGGggg----GCGaCCUGUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 111661 0.73 0.221916
Target:  5'- -aGCCCuCCCGCgccGCggUGGCGGCGu -3'
miRNA:   3'- cgCGGG-GGGCGaccUGuuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 29781 0.73 0.221916
Target:  5'- cGCGCCCauggccuaCCCGgaGGccgGCGcCGGCGGCGc -3'
miRNA:   3'- -CGCGGG--------GGGCgaCC---UGUuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 134357 0.73 0.22922
Target:  5'- cGCGCCgCCgcgcggggggcggcgCCGCUGG-CGACGGCGagaGCGg -3'
miRNA:   3'- -CGCGG-GG---------------GGCGACCuGUUGCCGC---CGC- -5'
23747 3' -64.1 NC_005261.1 + 55270 0.72 0.232412
Target:  5'- uGCGCCCCCuggcgCGCcGGA-GGCGGgGGCGc -3'
miRNA:   3'- -CGCGGGGG-----GCGaCCUgUUGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 1283 0.72 0.232412
Target:  5'- gGCGCCCaggCCgGCgGGGCucccgucgccGGCGGCGGCa -3'
miRNA:   3'- -CGCGGG---GGgCGaCCUG----------UUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 86858 0.72 0.232412
Target:  5'- gGCGCUCaacgCCGCcGGGC-GCGGCGGCc -3'
miRNA:   3'- -CGCGGGg---GGCGaCCUGuUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 98335 0.72 0.237815
Target:  5'- gGCGCgCCCCGUgucGAC-GCGGgGGCGg -3'
miRNA:   3'- -CGCGgGGGGCGac-CUGuUGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 127326 0.72 0.237815
Target:  5'- cUGCCgCCCGCggGGGCcggAGCGGCGGgGc -3'
miRNA:   3'- cGCGGgGGGCGa-CCUG---UUGCCGCCgC- -5'
23747 3' -64.1 NC_005261.1 + 12557 0.72 0.237815
Target:  5'- gGgGCCCCgCGCcGGGCAACGcGgGGCc -3'
miRNA:   3'- -CgCGGGGgGCGaCCUGUUGC-CgCCGc -5'
23747 3' -64.1 NC_005261.1 + 130781 0.72 0.237815
Target:  5'- gGCGCCCCgCGCUGGcCGcACcGCGGaCGa -3'
miRNA:   3'- -CGCGGGGgGCGACCuGU-UGcCGCC-GC- -5'
23747 3' -64.1 NC_005261.1 + 31924 0.72 0.237815
Target:  5'- gGCGCCg-CCGCUGGGCucuGCcGCGGCGc -3'
miRNA:   3'- -CGCGGggGGCGACCUGu--UGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 28170 0.72 0.237815
Target:  5'- gGCGCCCCCCgucucGCUGcGCGccgaagcCGGCGGCc -3'
miRNA:   3'- -CGCGGGGGG-----CGACcUGUu------GCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 131800 0.72 0.24166
Target:  5'- cGCGCCCgCCGCgccuGACGGCGcgccgccgcuugacGCGGCGc -3'
miRNA:   3'- -CGCGGGgGGCGac--CUGUUGC--------------CGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 93661 0.72 0.243323
Target:  5'- aCGCCCaccggUCCGC-GGGCGGCGGCgccGGCGg -3'
miRNA:   3'- cGCGGG-----GGGCGaCCUGUUGCCG---CCGC- -5'
23747 3' -64.1 NC_005261.1 + 63551 0.72 0.243323
Target:  5'- cGCGCCgugCCCGCUGG-C-GCGGcCGGCa -3'
miRNA:   3'- -CGCGGg--GGGCGACCuGuUGCC-GCCGc -5'
23747 3' -64.1 NC_005261.1 + 80102 0.72 0.243323
Target:  5'- cGCGCCgcgguaCCgGCuUGGGCGccgcggcaGCGGCGGCGc -3'
miRNA:   3'- -CGCGGg-----GGgCG-ACCUGU--------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 51142 0.72 0.243323
Target:  5'- gGCGCgaaagCCCCCG--GGGCccuGCGGCGGCGc -3'
miRNA:   3'- -CGCG-----GGGGGCgaCCUGu--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 13327 0.72 0.248937
Target:  5'- aGCGCCCucgcaCUCGCgcGGcCAGCGGuCGGCGg -3'
miRNA:   3'- -CGCGGG-----GGGCGa-CCuGUUGCC-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.