miRNA display CGI


Results 21 - 40 of 377 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 274 0.66 0.541295
Target:  5'- gGCGgCUgCgGCgGcGGCuGCGGCGGCGg -3'
miRNA:   3'- -CGCgGGgGgCGaC-CUGuUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 66600 0.66 0.541295
Target:  5'- uGCGCgCgagCUGCUGGAUGGCGcGCGuGCGc -3'
miRNA:   3'- -CGCGgGg--GGCGACCUGUUGC-CGC-CGC- -5'
23747 3' -64.1 NC_005261.1 + 53707 0.66 0.541295
Target:  5'- gGCGCCgCgCGCcgcGGcCAGCuGCGGCGc -3'
miRNA:   3'- -CGCGGgGgGCGa--CCuGUUGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 47404 0.66 0.541295
Target:  5'- cCGCCCCCCGUgc-ACAcGCGGUacucccggugGGCGa -3'
miRNA:   3'- cGCGGGGGGCGaccUGU-UGCCG----------CCGC- -5'
23747 3' -64.1 NC_005261.1 + 310 0.66 0.541295
Target:  5'- gGCGgCUgCgGCgGcGGCuGCGGCGGCGg -3'
miRNA:   3'- -CGCgGGgGgCGaC-CUGuUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 110882 0.66 0.541295
Target:  5'- cGCuGCCCCgucucgCgGCUGGGCGACuGCGacGCGa -3'
miRNA:   3'- -CG-CGGGG------GgCGACCUGUUGcCGC--CGC- -5'
23747 3' -64.1 NC_005261.1 + 109859 0.66 0.541295
Target:  5'- gGCGgCUCCUGg-GGGCAGCGG-GGCc -3'
miRNA:   3'- -CGCgGGGGGCgaCCUGUUGCCgCCGc -5'
23747 3' -64.1 NC_005261.1 + 132875 0.66 0.541295
Target:  5'- uGCGCCUgCCCuucuucggcaaGCcGGGCGccGCgGGCGGCGc -3'
miRNA:   3'- -CGCGGG-GGG-----------CGaCCUGU--UG-CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 106852 0.66 0.541295
Target:  5'- -aGCCCgCCGcCUGGGgGGCgGGCGuccGCGg -3'
miRNA:   3'- cgCGGGgGGC-GACCUgUUG-CCGC---CGC- -5'
23747 3' -64.1 NC_005261.1 + 133020 0.66 0.539412
Target:  5'- uGCGCCaCCCGC-GGGCGcgccaccgcgcacgcACgugcugcgcggcguuGGCGGCGa -3'
miRNA:   3'- -CGCGGgGGGCGaCCUGU---------------UG---------------CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 133152 0.66 0.538471
Target:  5'- cGCGCUCgCCGCcGucggcgucgccgccGACAACcGCGGCGc -3'
miRNA:   3'- -CGCGGGgGGCGaC--------------CUGUUGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 127770 0.66 0.535652
Target:  5'- gGCGCgaagacgCCCgGCUGcucgagcggcgggccGGCGccGCGGCGGCGg -3'
miRNA:   3'- -CGCGg------GGGgCGAC---------------CUGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 13021 0.66 0.531901
Target:  5'- cGCGCCCCCCagcaccacgaGCcaGGGCG-CGG-GGCc -3'
miRNA:   3'- -CGCGGGGGG----------CGa-CCUGUuGCCgCCGc -5'
23747 3' -64.1 NC_005261.1 + 90220 0.66 0.531901
Target:  5'- aGCGCCCUCgCGCggcGGGCG--GGCGcGCc -3'
miRNA:   3'- -CGCGGGGG-GCGa--CCUGUugCCGC-CGc -5'
23747 3' -64.1 NC_005261.1 + 47881 0.66 0.531901
Target:  5'- aGCGUCCgg-GgaGcGGCGGCGGCGGCGc -3'
miRNA:   3'- -CGCGGGgggCgaC-CUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 69172 0.66 0.531901
Target:  5'- cGCGCCCCuuGacgaGGGCAccgucGCGgacGCGGCc -3'
miRNA:   3'- -CGCGGGGggCga--CCUGU-----UGC---CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 180 0.66 0.531901
Target:  5'- gGCGCCCCUgGUgcucccgGGGcCAGCGGUGcCGc -3'
miRNA:   3'- -CGCGGGGGgCGa------CCU-GUUGCCGCcGC- -5'
23747 3' -64.1 NC_005261.1 + 121485 0.66 0.531901
Target:  5'- cCGgCUgCCGCcacgGGGCGGCGG-GGCGg -3'
miRNA:   3'- cGCgGGgGGCGa---CCUGUUGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 12417 0.66 0.531901
Target:  5'- -aGCCCUCCag-GGGCGGCGgagggcuuGCGGCGu -3'
miRNA:   3'- cgCGGGGGGcgaCCUGUUGC--------CGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 137863 0.66 0.531901
Target:  5'- gGCGCCCCUgGUgcucccgGGGcCAGCGGUGcCGc -3'
miRNA:   3'- -CGCGGGGGgCGa------CCU-GUUGCCGCcGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.