Results 41 - 60 of 377 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 137863 | 0.66 | 0.531901 |
Target: 5'- gGCGCCCCUgGUgcucccgGGGcCAGCGGUGcCGc -3' miRNA: 3'- -CGCGGGGGgCGa------CCU-GUUGCCGCcGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 66972 | 0.66 | 0.531901 |
Target: 5'- cCGCa-CCUGCUGGAagaagcugaaCAGCGcGCGGUGg -3' miRNA: 3'- cGCGggGGGCGACCU----------GUUGC-CGCCGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 9602 | 0.66 | 0.530965 |
Target: 5'- ---aCCCCCGCcucgggcccggggUGGGCAgGCGGgGGUGg -3' miRNA: 3'- cgcgGGGGGCG-------------ACCUGU-UGCCgCCGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 118590 | 0.66 | 0.523498 |
Target: 5'- cGCGCCgCCgCCGC-GGAgcucgcgcugucggcCGuugcccuggccgccGCGGCGGCGc -3' miRNA: 3'- -CGCGG-GG-GGCGaCCU---------------GU--------------UGCCGCCGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 101121 | 0.66 | 0.522567 |
Target: 5'- gGCGCCcucgugguCCUCGCgcgaGGCugccgcGCGGCGGCGc -3' miRNA: 3'- -CGCGG--------GGGGCGac--CUGu-----UGCCGCCGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 43622 | 0.66 | 0.522567 |
Target: 5'- aGUGCUUCgUGCugUGGGCGcccguguggcGCGGCGGUGa -3' miRNA: 3'- -CGCGGGGgGCG--ACCUGU----------UGCCGCCGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 62299 | 0.66 | 0.522567 |
Target: 5'- -gGCgCCgCGC-GGGCGcGCGGCGGCc -3' miRNA: 3'- cgCGgGGgGCGaCCUGU-UGCCGCCGc -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 116624 | 0.66 | 0.522567 |
Target: 5'- cCGCCCgCCCGCc-GACGAgGGCgaGGCc -3' miRNA: 3'- cGCGGG-GGGCGacCUGUUgCCG--CCGc -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 136435 | 0.66 | 0.522567 |
Target: 5'- -gGCCCCCuCGCgggcgucgcagGGGCAcGCGGCaGCc -3' miRNA: 3'- cgCGGGGG-GCGa----------CCUGU-UGCCGcCGc -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 74102 | 0.66 | 0.522567 |
Target: 5'- uCGCCCCCCcggGCccGGACc-CGGUGGUc -3' miRNA: 3'- cGCGGGGGG---CGa-CCUGuuGCCGCCGc -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 52454 | 0.66 | 0.522567 |
Target: 5'- -gGUCCCCgGCgcgcgucaGGAUGcgguuGCGGCGGCa -3' miRNA: 3'- cgCGGGGGgCGa-------CCUGU-----UGCCGCCGc -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 99514 | 0.66 | 0.519779 |
Target: 5'- aGgGCCCgCCCGUUgcgugcaccgucgaGGGCGcguccaGGCGGCGc -3' miRNA: 3'- -CgCGGG-GGGCGA--------------CCUGUug----CCGCCGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 103465 | 0.66 | 0.516996 |
Target: 5'- cGCGCCCgucgccagggcgUCCaGCUGGcgcaagacgucgucgGCGccgcggACGGCGGCGu -3' miRNA: 3'- -CGCGGG------------GGG-CGACC---------------UGU------UGCCGCCGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 99871 | 0.66 | 0.513296 |
Target: 5'- cGCGCCgCCgCCGCUcGGcGCGAgGGCGuuGa -3' miRNA: 3'- -CGCGG-GG-GGCGA-CC-UGUUgCCGCcgC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 131681 | 0.66 | 0.513296 |
Target: 5'- uGCGaCCgCCCugcgcgcggCGCUGGACcGCcucgagagccaGGCGGCGc -3' miRNA: 3'- -CGC-GG-GGG---------GCGACCUGuUG-----------CCGCCGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 32302 | 0.66 | 0.513296 |
Target: 5'- gGCGCcgCCCCCGCcGccgccGCGGCcGCGGCGc -3' miRNA: 3'- -CGCG--GGGGGCGaCc----UGUUGcCGCCGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 34103 | 0.66 | 0.513296 |
Target: 5'- gGCGCCCaaccugCCCGCUGuGCAA-GGCGcccguGCGg -3' miRNA: 3'- -CGCGGG------GGGCGACcUGUUgCCGC-----CGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 67142 | 0.66 | 0.513296 |
Target: 5'- cGCGgCgCCCGUUuuauacccacGCGGCGGCGGCGu -3' miRNA: 3'- -CGCgGgGGGCGAcc--------UGUUGCCGCCGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 34700 | 0.66 | 0.513296 |
Target: 5'- uGgGCCCCUCGCaccucGAgccuCAGCGGuCGGCGc -3' miRNA: 3'- -CgCGGGGGGCGac---CU----GUUGCC-GCCGC- -5' |
|||||||
23747 | 3' | -64.1 | NC_005261.1 | + | 75865 | 0.66 | 0.513296 |
Target: 5'- gGCGgCCCCgacggCGCcgUGGGCGcgcGCaGCGGCGa -3' miRNA: 3'- -CGCgGGGG-----GCG--ACCUGU---UGcCGCCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home