miRNA display CGI


Results 61 - 80 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 32302 0.66 0.513296
Target:  5'- gGCGCcgCCCCCGCcGccgccGCGGCcGCGGCGc -3'
miRNA:   3'- -CGCG--GGGGGCGaCc----UGUUGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 43758 0.66 0.513296
Target:  5'- cGUGCCCCUgaaggUGCUcgugGGGCGGCGcGCGGa- -3'
miRNA:   3'- -CGCGGGGG-----GCGA----CCUGUUGC-CGCCgc -5'
23747 3' -64.1 NC_005261.1 + 88345 0.66 0.513296
Target:  5'- gGCGCCCCgCCGCcGcGGCGuucacaucggaACGGcCGaGCGc -3'
miRNA:   3'- -CGCGGGG-GGCGaC-CUGU-----------UGCC-GC-CGC- -5'
23747 3' -64.1 NC_005261.1 + 34700 0.66 0.513296
Target:  5'- uGgGCCCCUCGCaccucGAgccuCAGCGGuCGGCGc -3'
miRNA:   3'- -CgCGGGGGGCGac---CU----GUUGCC-GCCGC- -5'
23747 3' -64.1 NC_005261.1 + 117356 0.66 0.512373
Target:  5'- gGCGCCgCCCGCaaggccgcccuccUGGAggcgcgcugcuuCGGCGG-GGCGc -3'
miRNA:   3'- -CGCGGgGGGCG-------------ACCU------------GUUGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 120615 0.66 0.51145
Target:  5'- gGCGCCguggggcUCCUGCUGGugGcggcccugugccuGCGGCgcaaGGCGc -3'
miRNA:   3'- -CGCGG-------GGGGCGACCugU-------------UGCCG----CCGC- -5'
23747 3' -64.1 NC_005261.1 + 4429 0.67 0.507766
Target:  5'- -gGCCUCgCCGgaGGGCgucAgcagcgggcccuccaGCGGCGGCGg -3'
miRNA:   3'- cgCGGGG-GGCgaCCUG---U---------------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 76546 0.67 0.504094
Target:  5'- uCGCCCUCUacgGCaUGGGCGACGaG-GGCGa -3'
miRNA:   3'- cGCGGGGGG---CG-ACCUGUUGC-CgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 62089 0.67 0.504094
Target:  5'- gGCGCUgCCCaGCUGcACGAUGGCguuGGCc -3'
miRNA:   3'- -CGCGGgGGG-CGACcUGUUGCCG---CCGc -5'
23747 3' -64.1 NC_005261.1 + 55572 0.67 0.504094
Target:  5'- aCGUcgCCCCCGCaGu-CcGCGGCGGCGu -3'
miRNA:   3'- cGCG--GGGGGCGaCcuGuUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 43289 0.67 0.504094
Target:  5'- cCGCCUuuCCCGCgggGGGCGcCGGCaGCc -3'
miRNA:   3'- cGCGGG--GGGCGa--CCUGUuGCCGcCGc -5'
23747 3' -64.1 NC_005261.1 + 83846 0.67 0.504094
Target:  5'- cGgGCCgcggCCCCGCUGGGCug-GGCcgGGCc -3'
miRNA:   3'- -CgCGG----GGGGCGACCUGuugCCG--CCGc -5'
23747 3' -64.1 NC_005261.1 + 107506 0.67 0.504094
Target:  5'- uGCGCCacgcaggCCGCgccgaaGGGCAGCGcGuCGGCGg -3'
miRNA:   3'- -CGCGGgg-----GGCGa-----CCUGUUGC-C-GCCGC- -5'
23747 3' -64.1 NC_005261.1 + 11068 0.67 0.494964
Target:  5'- gGCGCCgCCagCGCgucuagGGACGggACGG-GGCGg -3'
miRNA:   3'- -CGCGG-GGg-GCGa-----CCUGU--UGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 31168 0.67 0.494964
Target:  5'- cGCGCCCagcgCCGC-GG-CGcUGGCGGCc -3'
miRNA:   3'- -CGCGGGg---GGCGaCCuGUuGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 37217 0.67 0.494964
Target:  5'- uGUGgCUCCCGC-GGGCuugcGCGGCgcGGCGc -3'
miRNA:   3'- -CGCgGGGGGCGaCCUGu---UGCCG--CCGC- -5'
23747 3' -64.1 NC_005261.1 + 90097 0.67 0.494964
Target:  5'- gGgGCCCguucgCCgGCUGGGcCGACGcggcccGCGGCGa -3'
miRNA:   3'- -CgCGGG-----GGgCGACCU-GUUGC------CGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 38589 0.67 0.494964
Target:  5'- --uCUCCCUGCUGG-CGgcccGCGGCuGGCGg -3'
miRNA:   3'- cgcGGGGGGCGACCuGU----UGCCG-CCGC- -5'
23747 3' -64.1 NC_005261.1 + 50026 0.67 0.494964
Target:  5'- gGCGCCCagCCGCcGcGCGACGGUGcaGCGc -3'
miRNA:   3'- -CGCGGGg-GGCGaCcUGUUGCCGC--CGC- -5'
23747 3' -64.1 NC_005261.1 + 95393 0.67 0.494964
Target:  5'- cGCGCCgCUCGC-GGcCAucACGGCGGa- -3'
miRNA:   3'- -CGCGGgGGGCGaCCuGU--UGCCGCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.