miRNA display CGI


Results 81 - 100 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 11068 0.67 0.494964
Target:  5'- gGCGCCgCCagCGCgucuagGGACGggACGG-GGCGg -3'
miRNA:   3'- -CGCGG-GGg-GCGa-----CCUGU--UGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 18740 0.67 0.493146
Target:  5'- gGCGCCCCaaaacagcggccCCGCagagcagggccaGGGCAACagcaGCGGCGa -3'
miRNA:   3'- -CGCGGGG------------GGCGa-----------CCUGUUGc---CGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 1773 0.67 0.489521
Target:  5'- aGCGCa---CGUUGGcgccgcggcagagccGCAGCGGCGGCGc -3'
miRNA:   3'- -CGCGggggGCGACC---------------UGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 23442 0.67 0.489521
Target:  5'- gGCGCCagUCCuCaGGGCAgaaggcgccaggcccGCGGCGGCGa -3'
miRNA:   3'- -CGCGGg-GGGcGaCCUGU---------------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 80873 0.67 0.485909
Target:  5'- cGCGCUCagCCGCgcGGGCuuCaGCGGCGc -3'
miRNA:   3'- -CGCGGGg-GGCGa-CCUGuuGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 131167 0.67 0.485909
Target:  5'- cCGCCUUCUGCUGccGCAGCGGCuacgcccgcGGCGc -3'
miRNA:   3'- cGCGGGGGGCGACc-UGUUGCCG---------CCGC- -5'
23747 3' -64.1 NC_005261.1 + 97031 0.67 0.485909
Target:  5'- cGCGCCCggCCGCccacauccacaGGGCgGGgGGCGGCGg -3'
miRNA:   3'- -CGCGGGg-GGCGa----------CCUG-UUgCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 29982 0.67 0.485909
Target:  5'- uGCGCCgCCgGCgcguccGGCAGCGGC-GCGu -3'
miRNA:   3'- -CGCGGgGGgCGac----CUGUUGCCGcCGC- -5'
23747 3' -64.1 NC_005261.1 + 4639 0.67 0.477828
Target:  5'- -gGCCCCCgagucccuaaauccaGUgucGGccGCGGCGGCGGCGg -3'
miRNA:   3'- cgCGGGGGg--------------CGa--CC--UGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 108000 0.67 0.476934
Target:  5'- -aGCCCgCCGUcGGGCAGCcccagcaGCGGCa -3'
miRNA:   3'- cgCGGGgGGCGaCCUGUUGc------CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 105145 0.67 0.476934
Target:  5'- cGCGCagguCCUCGC-GGcuCGAgGGCGGCGu -3'
miRNA:   3'- -CGCGg---GGGGCGaCCu-GUUgCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 46073 0.67 0.476934
Target:  5'- gGCGCCgCCUCGUggccGGACAcgagcacguACGGcCGGgGg -3'
miRNA:   3'- -CGCGG-GGGGCGa---CCUGU---------UGCC-GCCgC- -5'
23747 3' -64.1 NC_005261.1 + 74902 0.67 0.476934
Target:  5'- gGCGgCCCgCGCUGGccgcGCGGgGGagGGCGa -3'
miRNA:   3'- -CGCgGGGgGCGACC----UGUUgCCg-CCGC- -5'
23747 3' -64.1 NC_005261.1 + 66015 0.67 0.476934
Target:  5'- cGCGCgCCaCCGCcGGcGCGucguaguCGGCGGCc -3'
miRNA:   3'- -CGCGgGG-GGCGaCC-UGUu------GCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 103186 0.67 0.476934
Target:  5'- cUGCaCgCCCGC-GGuCAcgcGCGGCGGCGc -3'
miRNA:   3'- cGCG-GgGGGCGaCCuGU---UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 2668 0.67 0.476934
Target:  5'- --uCCCgCCGCgcuggGGACc-CGGCGGCGc -3'
miRNA:   3'- cgcGGGgGGCGa----CCUGuuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 103296 0.67 0.476934
Target:  5'- cGCGCagCCCCGCgaagcccuGCAGCGGCaGCa -3'
miRNA:   3'- -CGCGg-GGGGCGacc-----UGUUGCCGcCGc -5'
23747 3' -64.1 NC_005261.1 + 107885 0.67 0.476934
Target:  5'- cGCGCCCgcggCCCGCUuGuCcGCGGCcGCGg -3'
miRNA:   3'- -CGCGGG----GGGCGAcCuGuUGCCGcCGC- -5'
23747 3' -64.1 NC_005261.1 + 68721 0.67 0.476934
Target:  5'- -gGCCCUCaCGCggcGGGCGcCGGCGGg- -3'
miRNA:   3'- cgCGGGGG-GCGa--CCUGUuGCCGCCgc -5'
23747 3' -64.1 NC_005261.1 + 136830 0.67 0.476041
Target:  5'- gGCGCCCCCgCGCgugaGGuagaGCAugaacuuGCGGCagGGCa -3'
miRNA:   3'- -CGCGGGGG-GCGa---CC----UGU-------UGCCG--CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.