miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 126 0.68 0.42409
Target:  5'- gGCGCCgCCCCuggugcucgcgggGCUGG-CAG-GGCuGGCGg -3'
miRNA:   3'- -CGCGG-GGGG-------------CGACCuGUUgCCG-CCGC- -5'
23747 3' -64.1 NC_005261.1 + 180 0.66 0.531901
Target:  5'- gGCGCCCCUgGUgcucccgGGGcCAGCGGUGcCGc -3'
miRNA:   3'- -CGCGGGGGgCGa------CCU-GUUGCCGCcGC- -5'
23747 3' -64.1 NC_005261.1 + 231 0.73 0.197433
Target:  5'- cGCGggCCCCGCgagcGGGCccggcuGCGGCGGCGg -3'
miRNA:   3'- -CGCggGGGGCGa---CCUGu-----UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 274 0.66 0.541295
Target:  5'- gGCGgCUgCgGCgGcGGCuGCGGCGGCGg -3'
miRNA:   3'- -CGCgGGgGgCGaC-CUGuUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 310 0.66 0.541295
Target:  5'- gGCGgCUgCgGCgGcGGCuGCGGCGGCGg -3'
miRNA:   3'- -CGCgGGgGgCGaC-CUGuUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 358 0.71 0.26642
Target:  5'- gGCGCggCCCgGCggcgGuGGCGGCGGUGGCGg -3'
miRNA:   3'- -CGCGg-GGGgCGa---C-CUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 618 0.7 0.317875
Target:  5'- aGUGCCCgaCGCaggGGAUguGGCGGCGGCc -3'
miRNA:   3'- -CGCGGGggGCGa--CCUG--UUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 1283 0.72 0.232412
Target:  5'- gGCGCCCaggCCgGCgGGGCucccgucgccGGCGGCGGCa -3'
miRNA:   3'- -CGCGGG---GGgCGaCCUG----------UUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 1381 0.76 0.131087
Target:  5'- cGCGUCCCaggccaCGCcGGGCGccgcggccGCGGCGGCGg -3'
miRNA:   3'- -CGCGGGGg-----GCGaCCUGU--------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 1429 0.69 0.376455
Target:  5'- gGCGCCCgCCUccaGCac--CAGCGGCGGCGc -3'
miRNA:   3'- -CGCGGG-GGG---CGaccuGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 1539 0.73 0.199302
Target:  5'- cGCGCCgCCCGCaGGccagguacaccggccGCAGCGGCGcGCc -3'
miRNA:   3'- -CGCGGgGGGCGaCC---------------UGUUGCCGC-CGc -5'
23747 3' -64.1 NC_005261.1 + 1583 0.68 0.424927
Target:  5'- -aGCCCCCagcgGUUGG-CGgcGCGGUGGCu -3'
miRNA:   3'- cgCGGGGGg---CGACCuGU--UGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 1773 0.67 0.489521
Target:  5'- aGCGCa---CGUUGGcgccgcggcagagccGCAGCGGCGGCGc -3'
miRNA:   3'- -CGCGggggGCGACC---------------UGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 1901 0.72 0.254657
Target:  5'- aGCGCgCgCCGCUcaGGcCAGCGcGCGGCGc -3'
miRNA:   3'- -CGCGgGgGGCGA--CCuGUUGC-CGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 1970 0.69 0.376455
Target:  5'- uGCGCCUgCCCGaCggccGGGCcauCGGCGGCc -3'
miRNA:   3'- -CGCGGG-GGGC-Ga---CCUGuu-GCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 2404 0.71 0.272465
Target:  5'- aGCGCg-CCCGC-GGGCcccgcGCGGCGGCGg -3'
miRNA:   3'- -CGCGggGGGCGaCCUGu----UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 2548 0.66 0.550744
Target:  5'- aGCGCCgCggCGCUGGGCGcggGCGuGUGGUa -3'
miRNA:   3'- -CGCGGgGg-GCGACCUGU---UGC-CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 2637 0.75 0.167137
Target:  5'- gGgGCCCagcaCGCgggcGGGCAGCGGCGGCu -3'
miRNA:   3'- -CgCGGGgg--GCGa---CCUGUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 2668 0.67 0.476934
Target:  5'- --uCCCgCCGCgcuggGGACc-CGGCGGCGc -3'
miRNA:   3'- cgcGGGgGGCGa----CCUGuuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 2820 0.68 0.424927
Target:  5'- gGCGgCCCCagcccgaGCUcGGGCGGCagGGCcGGCGg -3'
miRNA:   3'- -CGCgGGGGg------CGA-CCUGUUG--CCG-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.