miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 3147 0.66 0.550744
Target:  5'- cCGUCCCcguCCGa-GGcccCGGCGGCGGCGg -3'
miRNA:   3'- cGCGGGG---GGCgaCCu--GUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 3724 0.69 0.353658
Target:  5'- aCGCgCCgCUGCcGGACGcgcCGGCGGCGc -3'
miRNA:   3'- cGCGgGG-GGCGaCCUGUu--GCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 3820 0.69 0.353658
Target:  5'- cGCGCgCUgCCGCgggcccGGGCGcUGGCGGCa -3'
miRNA:   3'- -CGCG-GGgGGCGa-----CCUGUuGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 4378 0.77 0.113044
Target:  5'- cGCGCCgCCgaagcgcaCGCggccGGGCGGCGGCGGCGc -3'
miRNA:   3'- -CGCGGgGG--------GCGa---CCUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 4429 0.67 0.507766
Target:  5'- -gGCCUCgCCGgaGGGCgucAgcagcgggcccuccaGCGGCGGCGg -3'
miRNA:   3'- cgCGGGG-GGCgaCCUG---U---------------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 4516 0.7 0.324808
Target:  5'- cGCGCgCCCgCGC-GGGCGccGCGGCgagGGCGc -3'
miRNA:   3'- -CGCGgGGG-GCGaCCUGU--UGCCG---CCGC- -5'
23747 3' -64.1 NC_005261.1 + 4590 0.71 0.272465
Target:  5'- gGCGCCCCCCgGCgccaGGGCuccccuCGGCGuCGg -3'
miRNA:   3'- -CGCGGGGGG-CGa---CCUGuu----GCCGCcGC- -5'
23747 3' -64.1 NC_005261.1 + 4639 0.67 0.477828
Target:  5'- -gGCCCCCgagucccuaaauccaGUgucGGccGCGGCGGCGGCGg -3'
miRNA:   3'- cgCGGGGGg--------------CGa--CC--UGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 4810 0.75 0.155476
Target:  5'- gGCGUcaacuuCCUCCGCguUGGGCGcagGCGGCGGCGu -3'
miRNA:   3'- -CGCG------GGGGGCG--ACCUGU---UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 4884 0.66 0.560243
Target:  5'- cCGCCUCagCCGCggccgccucGGCuuCGGCGGCGg -3'
miRNA:   3'- cGCGGGG--GGCGac-------CUGuuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 5414 0.68 0.42829
Target:  5'- gGCGCCgCgaacgaaggagacgaCCGC-GGccGCGGCGGCGGCa -3'
miRNA:   3'- -CGCGGgG---------------GGCGaCC--UGUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 5459 0.75 0.158512
Target:  5'- aGCGCCCCCCcgagcagcccccGCUaucgcgcgcgccgggGGguagcuggggccgcgGCAGCGGCGGCGa -3'
miRNA:   3'- -CGCGGGGGG------------CGA---------------CC---------------UGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 5998 0.69 0.361148
Target:  5'- cGCuCCUCCCGCggcgaGGGCucCGGCGaGCGu -3'
miRNA:   3'- -CGcGGGGGGCGa----CCUGuuGCCGC-CGC- -5'
23747 3' -64.1 NC_005261.1 + 6065 0.78 0.097344
Target:  5'- gGgGCCCCUCGUcccGACGGCGGCGGCa -3'
miRNA:   3'- -CgCGGGGGGCGac-CUGUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 8443 0.68 0.432514
Target:  5'- cGCGCCCCCuCGCgGcGAaaaaaucUAAUGGCGGa- -3'
miRNA:   3'- -CGCGGGGG-GCGaC-CU-------GUUGCCGCCgc -5'
23747 3' -64.1 NC_005261.1 + 9169 0.71 0.26642
Target:  5'- gGCGCCgCCCgGCcaGGuACGugGGCGGgGa -3'
miRNA:   3'- -CGCGG-GGGgCGa-CC-UGUugCCGCCgC- -5'
23747 3' -64.1 NC_005261.1 + 9602 0.66 0.530965
Target:  5'- ---aCCCCCGCcucgggcccggggUGGGCAgGCGGgGGUGg -3'
miRNA:   3'- cgcgGGGGGCG-------------ACCUGU-UGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 10091 0.76 0.141075
Target:  5'- cCGaCCCCCGCcgcgccccGGCAGCGGCGGCGa -3'
miRNA:   3'- cGCgGGGGGCGac------CUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 10509 0.68 0.450519
Target:  5'- cGCGgCCgCCGCUgcGGGCcccGCGGCGcGCu -3'
miRNA:   3'- -CGCgGGgGGCGA--CCUGu--UGCCGC-CGc -5'
23747 3' -64.1 NC_005261.1 + 10875 0.67 0.468042
Target:  5'- cGUGUucuUCCCCGagcccGGcgcCAACGGCGGCGg -3'
miRNA:   3'- -CGCG---GGGGGCga---CCu--GUUGCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.