miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 11068 0.67 0.494964
Target:  5'- gGCGCCgCCagCGCgucuagGGACGggACGG-GGCGg -3'
miRNA:   3'- -CGCGG-GGg-GCGa-----CCUGU--UGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 11901 0.74 0.174922
Target:  5'- cGCGCCCgCCGCgGGcccggcccggccgGCGGCuGCGGCGg -3'
miRNA:   3'- -CGCGGGgGGCGaCC-------------UGUUGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 12133 0.7 0.33901
Target:  5'- gGCGCCCgCCGCc--GCGGCGGCcGCGc -3'
miRNA:   3'- -CGCGGGgGGCGaccUGUUGCCGcCGC- -5'
23747 3' -64.1 NC_005261.1 + 12295 0.68 0.416592
Target:  5'- cGCGUCCgCCGC-GGGC-ACGGgcgcguagcCGGCGg -3'
miRNA:   3'- -CGCGGGgGGCGaCCUGuUGCC---------GCCGC- -5'
23747 3' -64.1 NC_005261.1 + 12417 0.66 0.531901
Target:  5'- -aGCCCUCCag-GGGCGGCGgagggcuuGCGGCGu -3'
miRNA:   3'- cgCGGGGGGcgaCCUGUUGC--------CGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 12557 0.72 0.237815
Target:  5'- gGgGCCCCgCGCcGGGCAACGcGgGGCc -3'
miRNA:   3'- -CgCGGGGgGCGaCCUGUUGC-CgCCGc -5'
23747 3' -64.1 NC_005261.1 + 12740 0.69 0.358889
Target:  5'- -gGCCCCCUGggcGGGCccggcgaggucguaGGCGGCGGUGg -3'
miRNA:   3'- cgCGGGGGGCga-CCUG--------------UUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 13021 0.66 0.531901
Target:  5'- cGCGCCCCCCagcaccacgaGCcaGGGCG-CGG-GGCc -3'
miRNA:   3'- -CGCGGGGGG----------CGa-CCUGUuGCCgCCGc -5'
23747 3' -64.1 NC_005261.1 + 13058 0.73 0.216317
Target:  5'- cGCGCgCCCCUGCcGGGCGcguccGCcggcccgucggcgGGCGGCGg -3'
miRNA:   3'- -CGCG-GGGGGCGaCCUGU-----UG-------------CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 13327 0.72 0.248937
Target:  5'- aGCGCCCucgcaCUCGCgcGGcCAGCGGuCGGCGg -3'
miRNA:   3'- -CGCGGG-----GGGCGa-CCuGUUGCC-GCCGC- -5'
23747 3' -64.1 NC_005261.1 + 13659 0.68 0.450519
Target:  5'- cGUGCCgCCgCCGCggGGGgGGCGcGgGGCGc -3'
miRNA:   3'- -CGCGG-GG-GGCGa-CCUgUUGC-CgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 14301 0.68 0.416592
Target:  5'- -gGCCCcgaccgguagCCCGa-GGAgCGACGGCGGCa -3'
miRNA:   3'- cgCGGG----------GGGCgaCCU-GUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 15129 0.76 0.128853
Target:  5'- gGCGUcgcgacuccuucgCCCCCGCcguccgcggugggggUGGGCGuaGCGGCGGCGg -3'
miRNA:   3'- -CGCG-------------GGGGGCG---------------ACCUGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 15490 0.68 0.441036
Target:  5'- cGCGCCgCUCGCUgcgggcgGGGCGuguguCGGCGuGCa -3'
miRNA:   3'- -CGCGGgGGGCGA-------CCUGUu----GCCGC-CGc -5'
23747 3' -64.1 NC_005261.1 + 16425 0.68 0.408356
Target:  5'- -gGCCCCCUc---GACGGCgGGCGGCGg -3'
miRNA:   3'- cgCGGGGGGcgacCUGUUG-CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 17161 0.7 0.324808
Target:  5'- cCGUCaCCCGCggcgcgggcgUGGGCAgcccugccGCGGCGGCGa -3'
miRNA:   3'- cGCGGgGGGCG----------ACCUGU--------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 18740 0.67 0.493146
Target:  5'- gGCGCCCCaaaacagcggccCCGCagagcagggccaGGGCAACagcaGCGGCGa -3'
miRNA:   3'- -CGCGGGG------------GGCGa-----------CCUGUUGc---CGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 19228 0.67 0.459236
Target:  5'- aGCGUCcucaCCCCGC-GaGACuGCGGgGGCGc -3'
miRNA:   3'- -CGCGG----GGGGCGaC-CUGuUGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 20542 0.74 0.175341
Target:  5'- cCGCgCUCUGCUGGACgu-GGCGGCGg -3'
miRNA:   3'- cGCGgGGGGCGACCUGuugCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 20651 0.67 0.468042
Target:  5'- cCGCCCgCaCCGCcgGuGGCGGCaGCGGCa -3'
miRNA:   3'- cGCGGG-G-GGCGa-C-CUGUUGcCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.