miRNA display CGI


Results 61 - 80 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 22491 0.66 0.531901
Target:  5'- aGCGCgCCCgCGggGGGCcACG-CGGCGu -3'
miRNA:   3'- -CGCGgGGG-GCgaCCUGuUGCcGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 22674 0.7 0.324808
Target:  5'- gGCGCCCgagugCCGCcGGGgGACGGgccCGGCGa -3'
miRNA:   3'- -CGCGGGg----GGCGaCCUgUUGCC---GCCGC- -5'
23747 3' -64.1 NC_005261.1 + 22735 0.73 0.216821
Target:  5'- aGCGCCagucgggCGCgGGGCGGCGGCGGCc -3'
miRNA:   3'- -CGCGGggg----GCGaCCUGUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 22780 0.7 0.341904
Target:  5'- cGgGCCCCgcgagaaggggguugUCGC-GGcCGGCGGCGGCGc -3'
miRNA:   3'- -CgCGGGG---------------GGCGaCCuGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 23196 0.68 0.400224
Target:  5'- aGCGCgCCgCGg-GGcccGCAGCGGCGGCc -3'
miRNA:   3'- -CGCGgGGgGCgaCC---UGUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 23442 0.67 0.489521
Target:  5'- gGCGCCagUCCuCaGGGCAgaaggcgccaggcccGCGGCGGCGa -3'
miRNA:   3'- -CGCGGg-GGGcGaCCUGU---------------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 23613 0.68 0.433362
Target:  5'- uCGCCgCCgCUGCcgGGGC-GCGGCGGgGg -3'
miRNA:   3'- cGCGG-GG-GGCGa-CCUGuUGCCGCCgC- -5'
23747 3' -64.1 NC_005261.1 + 24376 0.74 0.183901
Target:  5'- gGUGCUCCCgG-UGGGCucguCGGCGGCGg -3'
miRNA:   3'- -CGCGGGGGgCgACCUGuu--GCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 25766 0.71 0.26642
Target:  5'- uUGCCCaCCCuggGgaGGACAA-GGCGGCGa -3'
miRNA:   3'- cGCGGG-GGG---CgaCCUGUUgCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 27459 0.67 0.468042
Target:  5'- cGgGCCgCCCCGCgGGGCG--GGCaGGCc -3'
miRNA:   3'- -CgCGG-GGGGCGaCCUGUugCCG-CCGc -5'
23747 3' -64.1 NC_005261.1 + 28170 0.72 0.237815
Target:  5'- gGCGCCCCCCgucucGCUGcGCGccgaagcCGGCGGCc -3'
miRNA:   3'- -CGCGGGGGG-----CGACcUGUu------GCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 28735 0.7 0.331853
Target:  5'- gGCGCCCUCCGaggccccagaGGACGccGCGGCcgggGGCGc -3'
miRNA:   3'- -CGCGGGGGGCga--------CCUGU--UGCCG----CCGC- -5'
23747 3' -64.1 NC_005261.1 + 29319 0.7 0.33901
Target:  5'- cGCGCCgCCgCCGCccGGccgcgugcGCuuCGGCGGCGc -3'
miRNA:   3'- -CGCGG-GG-GGCGa-CC--------UGuuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 29781 0.73 0.221916
Target:  5'- cGCGCCCauggccuaCCCGgaGGccgGCGcCGGCGGCGc -3'
miRNA:   3'- -CGCGGG--------GGGCgaCC---UGUuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 29892 0.72 0.260484
Target:  5'- aGCGCCCgggCCCGC-GG-CAGCGcGCGaGCGg -3'
miRNA:   3'- -CGCGGG---GGGCGaCCuGUUGC-CGC-CGC- -5'
23747 3' -64.1 NC_005261.1 + 29982 0.67 0.485909
Target:  5'- uGCGCCgCCgGCgcguccGGCAGCGGC-GCGu -3'
miRNA:   3'- -CGCGGgGGgCGac----CUGUUGCCGcCGC- -5'
23747 3' -64.1 NC_005261.1 + 30170 0.71 0.278619
Target:  5'- cGCGCCCgCCgCGCUGcGCGccgaGGCGGCc -3'
miRNA:   3'- -CGCGGG-GG-GCGACcUGUug--CCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 30227 0.7 0.311053
Target:  5'- gGCGCgaaccguggCCCCGCUGGcgcgguacuCGACGcGCGGCGc -3'
miRNA:   3'- -CGCGg--------GGGGCGACCu--------GUUGC-CGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 31109 0.7 0.346279
Target:  5'- gGCgGCCCCgCCGC----CGACGGCGGCu -3'
miRNA:   3'- -CG-CGGGG-GGCGaccuGUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 31168 0.67 0.494964
Target:  5'- cGCGCCCagcgCCGC-GG-CGcUGGCGGCc -3'
miRNA:   3'- -CGCGGGg---GGCGaCCuGUuGCCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.