miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 138029 0.71 0.26642
Target:  5'- gGCGCggCCCgGCggcgGuGGCGGCGGUGGCGg -3'
miRNA:   3'- -CGCGg-GGGgCGa---C-CUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 137957 0.66 0.541295
Target:  5'- gGCGgCUgCgGCgGcGGCuGCGGCGGCGg -3'
miRNA:   3'- -CGCgGGgGgCGaC-CUGuUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 137914 0.73 0.197433
Target:  5'- cGCGggCCCCGCgagcGGGCccggcuGCGGCGGCGg -3'
miRNA:   3'- -CGCggGGGGCGa---CCUGu-----UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 137863 0.66 0.531901
Target:  5'- gGCGCCCCUgGUgcucccgGGGcCAGCGGUGcCGc -3'
miRNA:   3'- -CGCGGGGGgCGa------CCU-GUUGCCGCcGC- -5'
23747 3' -64.1 NC_005261.1 + 137809 0.68 0.42409
Target:  5'- gGCGCCgCCCCuggugcucgcgggGCUGG-CAG-GGCuGGCGg -3'
miRNA:   3'- -CGCGG-GGGG-------------CGACCuGUUgCCG-CCGC- -5'
23747 3' -64.1 NC_005261.1 + 136830 0.67 0.476041
Target:  5'- gGCGCCCCCgCGCgugaGGuagaGCAugaacuuGCGGCagGGCa -3'
miRNA:   3'- -CGCGGGGG-GCGa---CC----UGU-------UGCCG--CCGc -5'
23747 3' -64.1 NC_005261.1 + 136435 0.66 0.522567
Target:  5'- -gGCCCCCuCGCgggcgucgcagGGGCAcGCGGCaGCc -3'
miRNA:   3'- cgCGGGGG-GCGa----------CCUGU-UGCCGcCGc -5'
23747 3' -64.1 NC_005261.1 + 135666 0.69 0.391398
Target:  5'- gGCGgCCCUCGCUcGAgGagcucugcgccgcGCGGCGGCu -3'
miRNA:   3'- -CGCgGGGGGCGAcCUgU-------------UGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 135063 0.71 0.291259
Target:  5'- aGCGgCCCgCCGCUuuccggcggcGGGCucgcggccCGGCGGCGg -3'
miRNA:   3'- -CGCgGGG-GGCGA----------CCUGuu------GCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 135001 0.75 0.151021
Target:  5'- gGCGCCCCUgGCgcggcGGGCccgcacgcggccGCGGCGGCGa -3'
miRNA:   3'- -CGCGGGGGgCGa----CCUGu-----------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 134872 0.71 0.284884
Target:  5'- cGCGCCCCCgcgggccccUGCUGuGCGuuCGGUGGUGg -3'
miRNA:   3'- -CGCGGGGG---------GCGACcUGUu-GCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 134554 0.83 0.044232
Target:  5'- cCGCCCCuuGCUGGGCGGCGccGCGGCu -3'
miRNA:   3'- cGCGGGGggCGACCUGUUGC--CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 134357 0.73 0.22922
Target:  5'- cGCGCCgCCgcgcggggggcggcgCCGCUGG-CGACGGCGagaGCGg -3'
miRNA:   3'- -CGCGG-GG---------------GGCGACCuGUUGCCGC---CGC- -5'
23747 3' -64.1 NC_005261.1 + 133152 0.66 0.538471
Target:  5'- cGCGCUCgCCGCcGucggcgucgccgccGACAACcGCGGCGc -3'
miRNA:   3'- -CGCGGGgGGCGaC--------------CUGUUGcCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 133020 0.66 0.539412
Target:  5'- uGCGCCaCCCGC-GGGCGcgccaccgcgcacgcACgugcugcgcggcguuGGCGGCGa -3'
miRNA:   3'- -CGCGGgGGGCGaCCUGU---------------UG---------------CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 132875 0.66 0.541295
Target:  5'- uGCGCCUgCCCuucuucggcaaGCcGGGCGccGCgGGCGGCGc -3'
miRNA:   3'- -CGCGGG-GGG-----------CGaCCUGU--UG-CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 132539 0.7 0.304344
Target:  5'- cGCGCCCUCgCGCgcgaGGGCGaggcgcaguACGGCuGCGa -3'
miRNA:   3'- -CGCGGGGG-GCGa---CCUGU---------UGCCGcCGC- -5'
23747 3' -64.1 NC_005261.1 + 132315 0.67 0.459236
Target:  5'- gGCGCcccauCCCCCGCggGGACcugcACGG-GGCc -3'
miRNA:   3'- -CGCG-----GGGGGCGa-CCUGu---UGCCgCCGc -5'
23747 3' -64.1 NC_005261.1 + 132159 0.71 0.278619
Target:  5'- aGCGCgCCgCCGCUGcaGGCAGCgcgGGCGGgGg -3'
miRNA:   3'- -CGCGgGG-GGCGAC--CUGUUG---CCGCCgC- -5'
23747 3' -64.1 NC_005261.1 + 131903 0.75 0.159279
Target:  5'- gGCGCgCaCCCGCUGGACGGgcuuuuUGGCGcGCGc -3'
miRNA:   3'- -CGCGgG-GGGCGACCUGUU------GCCGC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.