miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 131800 0.72 0.24166
Target:  5'- cGCGCCCgCCGCgccuGACGGCGcgccgccgcuugacGCGGCGc -3'
miRNA:   3'- -CGCGGGgGGCGac--CUGUUGC--------------CGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 131681 0.66 0.513296
Target:  5'- uGCGaCCgCCCugcgcgcggCGCUGGACcGCcucgagagccaGGCGGCGc -3'
miRNA:   3'- -CGC-GG-GGG---------GCGACCUGuUG-----------CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 131630 0.7 0.346279
Target:  5'- gGCGCCCgCCGCgaGGAcCGACGGgccccccgGGCGc -3'
miRNA:   3'- -CGCGGGgGGCGa-CCU-GUUGCCg-------CCGC- -5'
23747 3' -64.1 NC_005261.1 + 131575 0.66 0.560243
Target:  5'- gGCuGCCCCCCGCgacGGcCGaggccuACGcGCGcGCGc -3'
miRNA:   3'- -CG-CGGGGGGCGa--CCuGU------UGC-CGC-CGC- -5'
23747 3' -64.1 NC_005261.1 + 131410 0.75 0.159279
Target:  5'- -aGCCCCCCGCcgcugccGGCAGCGGCgccGGCGc -3'
miRNA:   3'- cgCGGGGGGCGac-----CUGUUGCCG---CCGC- -5'
23747 3' -64.1 NC_005261.1 + 131167 0.67 0.485909
Target:  5'- cCGCCUUCUGCUGccGCAGCGGCuacgcccgcGGCGc -3'
miRNA:   3'- cGCGGGGGGCGACc-UGUUGCCG---------CCGC- -5'
23747 3' -64.1 NC_005261.1 + 130856 0.69 0.353658
Target:  5'- cGCGCgCCCgGCcGGGCGccGCGGCcuGGCc -3'
miRNA:   3'- -CGCGgGGGgCGaCCUGU--UGCCG--CCGc -5'
23747 3' -64.1 NC_005261.1 + 130781 0.72 0.237815
Target:  5'- gGCGCCCCgCGCUGGcCGcACcGCGGaCGa -3'
miRNA:   3'- -CGCGGGGgGCGACCuGU-UGcCGCC-GC- -5'
23747 3' -64.1 NC_005261.1 + 130535 0.69 0.387428
Target:  5'- cGCGCCCgcucgucgcguuuuaUCUGCUGGGCGGCccgccgGGCGGa- -3'
miRNA:   3'- -CGCGGG---------------GGGCGACCUGUUG------CCGCCgc -5'
23747 3' -64.1 NC_005261.1 + 129720 0.69 0.361148
Target:  5'- -gGCCCgCCgGCUGcagcGGCAG-GGCGGCGg -3'
miRNA:   3'- cgCGGG-GGgCGAC----CUGUUgCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 129629 0.71 0.297746
Target:  5'- gGCG-CCUuuGCagGcGGCAACGGUGGCGg -3'
miRNA:   3'- -CGCgGGGggCGa-C-CUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 129588 0.67 0.468042
Target:  5'- cCGCgCgCCGCgGGACAcgcggcaauuucGCGGCGGgGu -3'
miRNA:   3'- cGCGgGgGGCGaCCUGU------------UGCCGCCgC- -5'
23747 3' -64.1 NC_005261.1 + 128857 0.68 0.416592
Target:  5'- gGUGCCCCgccucgUCGCUGccGACGACgaGGCGGgGg -3'
miRNA:   3'- -CGCGGGG------GGCGAC--CUGUUG--CCGCCgC- -5'
23747 3' -64.1 NC_005261.1 + 128797 0.71 0.284884
Target:  5'- gGCGCCCgggCCCGCggcgGGGCucGCGcuGCGGCu -3'
miRNA:   3'- -CGCGGG---GGGCGa---CCUGu-UGC--CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 128482 0.68 0.424927
Target:  5'- aGCGCgacaUCCUCGUcgUGGAgcuCGacGCGGCGGCGg -3'
miRNA:   3'- -CGCG----GGGGGCG--ACCU---GU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 127770 0.66 0.535652
Target:  5'- gGCGCgaagacgCCCgGCUGcucgagcggcgggccGGCGccGCGGCGGCGg -3'
miRNA:   3'- -CGCGg------GGGgCGAC---------------CUGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 127649 0.68 0.408356
Target:  5'- gGCGCCggggggCgCGCggguucgGGGCGggACGGCGGCGg -3'
miRNA:   3'- -CGCGGg-----GgGCGa------CCUGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 127618 0.69 0.361148
Target:  5'- aCGCUagcggCCgGCcGGACGcgACGGCGGCGg -3'
miRNA:   3'- cGCGGg----GGgCGaCCUGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 127496 0.69 0.384272
Target:  5'- gGCgGCUgCCUGCcGGGCGuacuCGGCGGCc -3'
miRNA:   3'- -CG-CGGgGGGCGaCCUGUu---GCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 127354 0.7 0.331853
Target:  5'- nGCGCUgggCCCGCguggcuaGGAUgucguuGGCGGCGGCGa -3'
miRNA:   3'- -CGCGGg--GGGCGa------CCUG------UUGCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.