miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 127326 0.72 0.237815
Target:  5'- cUGCCgCCCGCggGGGCcggAGCGGCGGgGc -3'
miRNA:   3'- cGCGGgGGGCGa-CCUG---UUGCCGCCgC- -5'
23747 3' -64.1 NC_005261.1 + 127280 0.74 0.169968
Target:  5'- cCGCCCgCCGCggGGGCAGCccuccccgccggcuGGCGGUGg -3'
miRNA:   3'- cGCGGGgGGCGa-CCUGUUG--------------CCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 127136 0.68 0.408356
Target:  5'- cGCGCCCgCCCGCcccaGaGACGACGcgacuCGGCu -3'
miRNA:   3'- -CGCGGG-GGGCGa---C-CUGUUGCc----GCCGc -5'
23747 3' -64.1 NC_005261.1 + 126553 0.66 0.550744
Target:  5'- cGCGCCgCCgucgcgcgcaaaUGCUGcaGCAGCGcGCGGCa -3'
miRNA:   3'- -CGCGGgGG------------GCGACc-UGUUGC-CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 126199 0.69 0.392195
Target:  5'- -aGCCCCgCGC-GGAcCAGCGGCaGCc -3'
miRNA:   3'- cgCGGGGgGCGaCCU-GUUGCCGcCGc -5'
23747 3' -64.1 NC_005261.1 + 125534 0.71 0.26642
Target:  5'- cGCGCCgCCCGCaGGGCGGCGccagaGGCc -3'
miRNA:   3'- -CGCGGgGGGCGaCCUGUUGCcg---CCGc -5'
23747 3' -64.1 NC_005261.1 + 125302 0.7 0.304344
Target:  5'- gGCGCCggaCCCGC-GGGCGcuccGCGGCcucGGCGu -3'
miRNA:   3'- -CGCGGg--GGGCGaCCUGU----UGCCG---CCGC- -5'
23747 3' -64.1 NC_005261.1 + 124664 0.68 0.433362
Target:  5'- -gGCCCUCCaaaaucCUGGGCAGCGGCaccucuaccugaGGCu -3'
miRNA:   3'- cgCGGGGGGc-----GACCUGUUGCCG------------CCGc -5'
23747 3' -64.1 NC_005261.1 + 124589 0.74 0.183901
Target:  5'- cGCGCUgaUCGUUGGGCGGCGuGCGGCa -3'
miRNA:   3'- -CGCGGggGGCGACCUGUUGC-CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 122989 0.69 0.392195
Target:  5'- -gGCCUCCUGCaGGGCcacuACGGCcGCGg -3'
miRNA:   3'- cgCGGGGGGCGaCCUGu---UGCCGcCGC- -5'
23747 3' -64.1 NC_005261.1 + 122292 0.68 0.441893
Target:  5'- aGCGCggCCCCGCUGccgcaGGCGACgcccgGGCcGGCGg -3'
miRNA:   3'- -CGCGg-GGGGCGAC-----CUGUUG-----CCG-CCGC- -5'
23747 3' -64.1 NC_005261.1 + 121983 0.66 0.564055
Target:  5'- aGCGCCgCCCaGCUGGcggaggucaugguugGCAuCaGCGGCc -3'
miRNA:   3'- -CGCGGgGGG-CGACC---------------UGUuGcCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 121686 0.71 0.290617
Target:  5'- gGCGCCCUCCagguugcGCaUGGAggcguagacgcCGACGGCGGgGg -3'
miRNA:   3'- -CGCGGGGGG-------CG-ACCU-----------GUUGCCGCCgC- -5'
23747 3' -64.1 NC_005261.1 + 121622 0.67 0.467157
Target:  5'- cCGCCUCCCGCcGcuCGGCGGCcgccgccGGCGa -3'
miRNA:   3'- cGCGGGGGGCGaCcuGUUGCCG-------CCGC- -5'
23747 3' -64.1 NC_005261.1 + 121485 0.66 0.531901
Target:  5'- cCGgCUgCCGCcacgGGGCGGCGG-GGCGg -3'
miRNA:   3'- cGCgGGgGGCGa---CCUGUUGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 121418 0.72 0.254657
Target:  5'- gGCuGCCgCCgCCGCUacgGGGCGGCGG-GGCGg -3'
miRNA:   3'- -CG-CGG-GG-GGCGA---CCUGUUGCCgCCGC- -5'
23747 3' -64.1 NC_005261.1 + 121382 0.66 0.559291
Target:  5'- gGCGCCCC-------GCGGCGGCGGCGc -3'
miRNA:   3'- -CGCGGGGggcgaccUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 120615 0.66 0.51145
Target:  5'- gGCGCCguggggcUCCUGCUGGugGcggcccugugccuGCGGCgcaaGGCGc -3'
miRNA:   3'- -CGCGG-------GGGGCGACCugU-------------UGCCG----CCGC- -5'
23747 3' -64.1 NC_005261.1 + 120348 0.73 0.211826
Target:  5'- cGCGUCUCCCugcGCUGGACGguGCGcGaCGGCGc -3'
miRNA:   3'- -CGCGGGGGG---CGACCUGU--UGC-C-GCCGC- -5'
23747 3' -64.1 NC_005261.1 + 119983 0.68 0.400224
Target:  5'- -aGCCCCggccgaCGCUGGAgGGCGcCGGCu -3'
miRNA:   3'- cgCGGGGg-----GCGACCUgUUGCcGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.