miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 53562 0.65 0.566919
Target:  5'- cGCGgCCCaggcgcacuagcggCCGC-GGGC--CGGCGGCGc -3'
miRNA:   3'- -CGCgGGG--------------GGCGaCCUGuuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 69286 0.77 0.121756
Target:  5'- cGCGCCgaCCCCgGCgcgGGGCGcCGGUGGCGg -3'
miRNA:   3'- -CGCGG--GGGG-CGa--CCUGUuGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 15129 0.76 0.128853
Target:  5'- gGCGUcgcgacuccuucgCCCCCGCcguccgcggugggggUGGGCGuaGCGGCGGCGg -3'
miRNA:   3'- -CGCG-------------GGGGGCG---------------ACCUGU--UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 1381 0.76 0.131087
Target:  5'- cGCGUCCCaggccaCGCcGGGCGccgcggccGCGGCGGCGg -3'
miRNA:   3'- -CGCGGGGg-----GCGaCCUGU--------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 33483 0.76 0.131087
Target:  5'- cGgGCCCgcucgcggggCCCGCgagcaccagGGGCGGCGGCGGCa -3'
miRNA:   3'- -CgCGGG----------GGGCGa--------CCUGUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 59703 0.76 0.131087
Target:  5'- cGCGCUCcgggcagacccgCCCGCcGGGCGgcaGCGGCGGCGc -3'
miRNA:   3'- -CGCGGG------------GGGCGaCCUGU---UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 31444 0.76 0.137671
Target:  5'- gGCGCCgCCCgGCgaGGACGAgcgcCGGCGGCc -3'
miRNA:   3'- -CGCGG-GGGgCGa-CCUGUU----GCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 109785 0.76 0.141075
Target:  5'- gGCGUCCCggCCGCUGcuGCGACGGCcGGCGc -3'
miRNA:   3'- -CGCGGGG--GGCGACc-UGUUGCCG-CCGC- -5'
23747 3' -64.1 NC_005261.1 + 10091 0.76 0.141075
Target:  5'- cCGaCCCCCGCcgcgccccGGCAGCGGCGGCGa -3'
miRNA:   3'- cGCgGGGGGCGac------CUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 88154 0.77 0.115309
Target:  5'- gGCGCCCCggCCGCgcagccgggccgGGGCGAcgcCGGCGGCGc -3'
miRNA:   3'- -CGCGGGG--GGCGa-----------CCUGUU---GCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 4378 0.77 0.113044
Target:  5'- cGCGCCgCCgaagcgcaCGCggccGGGCGGCGGCGGCGc -3'
miRNA:   3'- -CGCGGgGG--------GCGa---CCUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 88270 0.78 0.097344
Target:  5'- cGCGCCgCgCUGcCUGGACGacgACGGCGGCGc -3'
miRNA:   3'- -CGCGGgG-GGC-GACCUGU---UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 134554 0.83 0.044232
Target:  5'- cCGCCCCuuGCUGGGCGGCGccGCGGCu -3'
miRNA:   3'- cGCGGGGggCGACCUGUUGC--CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 68679 0.82 0.054887
Target:  5'- gGCGUCCgCCGCgugggggccggcgcGGACGACGGCGGCGc -3'
miRNA:   3'- -CGCGGGgGGCGa-------------CCUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 102938 0.8 0.06497
Target:  5'- aGCGCCgCCgCCGCUGcGGCGGCGGCcGCGg -3'
miRNA:   3'- -CGCGG-GG-GGCGAC-CUGUUGCCGcCGC- -5'
23747 3' -64.1 NC_005261.1 + 57489 0.79 0.079598
Target:  5'- -aGUCCCCCGCgacGGGCAcguccCGGCGGCGg -3'
miRNA:   3'- cgCGGGGGGCGa--CCUGUu----GCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 47611 0.79 0.081634
Target:  5'- cCGCCCCCUGCggGGGCGGCcGCGGCc -3'
miRNA:   3'- cGCGGGGGGCGa-CCUGUUGcCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 89042 0.79 0.088047
Target:  5'- cGCGCUUCCUGCUGGACAACGaG-GGCu -3'
miRNA:   3'- -CGCGGGGGGCGACCUGUUGC-CgCCGc -5'
23747 3' -64.1 NC_005261.1 + 35503 0.78 0.092585
Target:  5'- cCGCCcuugCCCCGCUGG-CAGCGGCaucGGCGg -3'
miRNA:   3'- cGCGG----GGGGCGACCuGUUGCCG---CCGC- -5'
23747 3' -64.1 NC_005261.1 + 6065 0.78 0.097344
Target:  5'- gGgGCCCCUCGUcccGACGGCGGCGGCa -3'
miRNA:   3'- -CgCGGGGGGCGac-CUGUUGCCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.