miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 3' -64.1 NC_005261.1 + 47611 0.79 0.081634
Target:  5'- cCGCCCCCUGCggGGGCGGCcGCGGCc -3'
miRNA:   3'- cGCGGGGGGCGa-CCUGUUGcCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 57489 0.79 0.079598
Target:  5'- -aGUCCCCCGCgacGGGCAcguccCGGCGGCGg -3'
miRNA:   3'- cgCGGGGGGCGa--CCUGUu----GCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 102938 0.8 0.06497
Target:  5'- aGCGCCgCCgCCGCUGcGGCGGCGGCcGCGg -3'
miRNA:   3'- -CGCGG-GG-GGCGAC-CUGUUGCCGcCGC- -5'
23747 3' -64.1 NC_005261.1 + 68679 0.82 0.054887
Target:  5'- gGCGUCCgCCGCgugggggccggcgcGGACGACGGCGGCGc -3'
miRNA:   3'- -CGCGGGgGGCGa-------------CCUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 134554 0.83 0.044232
Target:  5'- cCGCCCCuuGCUGGGCGGCGccGCGGCu -3'
miRNA:   3'- cGCGGGGggCGACCUGUUGC--CGCCGc -5'
23747 3' -64.1 NC_005261.1 + 1381 0.76 0.131087
Target:  5'- cGCGUCCCaggccaCGCcGGGCGccgcggccGCGGCGGCGg -3'
miRNA:   3'- -CGCGGGGg-----GCGaCCUGU--------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 33483 0.76 0.131087
Target:  5'- cGgGCCCgcucgcggggCCCGCgagcaccagGGGCGGCGGCGGCa -3'
miRNA:   3'- -CgCGGG----------GGGCGa--------CCUGUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 131410 0.75 0.159279
Target:  5'- -aGCCCCCCGCcgcugccGGCAGCGGCgccGGCGc -3'
miRNA:   3'- cgCGGGGGGCGac-----CUGUUGCCG---CCGC- -5'
23747 3' -64.1 NC_005261.1 + 5459 0.75 0.158512
Target:  5'- aGCGCCCCCCcgagcagcccccGCUaucgcgcgcgccgggGGguagcuggggccgcgGCAGCGGCGGCGa -3'
miRNA:   3'- -CGCGGGGGG------------CGA---------------CC---------------UGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 102137 0.75 0.156987
Target:  5'- cGCGUCCCaCCacgcgaugucgcgcaGCUGcGcCAGCGGCGGCGg -3'
miRNA:   3'- -CGCGGGG-GG---------------CGAC-CuGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 4810 0.75 0.155476
Target:  5'- gGCGUcaacuuCCUCCGCguUGGGCGcagGCGGCGGCGu -3'
miRNA:   3'- -CGCG------GGGGGCG--ACCUGU---UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 63062 0.75 0.151756
Target:  5'- aGCGCCgCgUCGCUGGcgcACAGCGGCGGg- -3'
miRNA:   3'- -CGCGG-GgGGCGACC---UGUUGCCGCCgc -5'
23747 3' -64.1 NC_005261.1 + 135001 0.75 0.151021
Target:  5'- gGCGCCCCUgGCgcggcGGGCccgcacgcggccGCGGCGGCGa -3'
miRNA:   3'- -CGCGGGGGgCGa----CCUGu-----------UGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 75447 0.75 0.149562
Target:  5'- aGCGCCUCCCaCgGGGCcaguuccaggcgccgGGCGGCGGCGc -3'
miRNA:   3'- -CGCGGGGGGcGaCCUG---------------UUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 72439 0.75 0.148116
Target:  5'- uUGCCCCCgGCggGGGCGcccGCGGCGaGCGc -3'
miRNA:   3'- cGCGGGGGgCGa-CCUGU---UGCCGC-CGC- -5'
23747 3' -64.1 NC_005261.1 + 73583 0.76 0.141075
Target:  5'- gGC-CCCCCCGCggcGGA-GGCGGCGGCc -3'
miRNA:   3'- -CGcGGGGGGCGa--CCUgUUGCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 10091 0.76 0.141075
Target:  5'- cCGaCCCCCGCcgcgccccGGCAGCGGCGGCGa -3'
miRNA:   3'- cGCgGGGGGCGac------CUGUUGCCGCCGC- -5'
23747 3' -64.1 NC_005261.1 + 109785 0.76 0.141075
Target:  5'- gGCGUCCCggCCGCUGcuGCGACGGCcGGCGc -3'
miRNA:   3'- -CGCGGGG--GGCGACc-UGUUGCCG-CCGC- -5'
23747 3' -64.1 NC_005261.1 + 31444 0.76 0.137671
Target:  5'- gGCGCCgCCCgGCgaGGACGAgcgcCGGCGGCc -3'
miRNA:   3'- -CGCGG-GGGgCGa-CCUGUU----GCCGCCGc -5'
23747 3' -64.1 NC_005261.1 + 59703 0.76 0.131087
Target:  5'- cGCGCUCcgggcagacccgCCCGCcGGGCGgcaGCGGCGGCGc -3'
miRNA:   3'- -CGCGGG------------GGGCGaCCUGU---UGCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.