miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23747 5' -55.3 NC_005261.1 + 132022 0.66 0.930099
Target:  5'- --gGCCGCCGUcacGGACGUGgccgccCUGGACc- -3'
miRNA:   3'- cagCGGCGGCA---CUUGCAC------GACUUGcu -5'
23747 5' -55.3 NC_005261.1 + 133156 0.66 0.930099
Target:  5'- cUCGCCGCCGUcGGCGUcgccGCcGAcaaccGCGGc -3'
miRNA:   3'- cAGCGGCGGCAcUUGCA----CGaCU-----UGCU- -5'
23747 5' -55.3 NC_005261.1 + 135787 0.66 0.924766
Target:  5'- -gUGCCGCUGUcGGAgGUGaccgUGGGCGAc -3'
miRNA:   3'- caGCGGCGGCA-CUUgCACg---ACUUGCU- -5'
23747 5' -55.3 NC_005261.1 + 68774 0.66 0.924766
Target:  5'- --aGCCGCCGUGucgaacuuCGUGCagGuGCGGc -3'
miRNA:   3'- cagCGGCGGCACuu------GCACGa-CuUGCU- -5'
23747 5' -55.3 NC_005261.1 + 104889 0.66 0.919191
Target:  5'- aUCGCCGCC----GCGUGCgcccGGACGc -3'
miRNA:   3'- cAGCGGCGGcacuUGCACGa---CUUGCu -5'
23747 5' -55.3 NC_005261.1 + 122605 0.66 0.919191
Target:  5'- -aCGCCGCguuguCGUGccUGUGCuUGAACGGc -3'
miRNA:   3'- caGCGGCG-----GCACuuGCACG-ACUUGCU- -5'
23747 5' -55.3 NC_005261.1 + 135315 0.66 0.919191
Target:  5'- uGUCGCC-CUGggcGGcCGUGCUGGACu- -3'
miRNA:   3'- -CAGCGGcGGCa--CUuGCACGACUUGcu -5'
23747 5' -55.3 NC_005261.1 + 65177 0.66 0.919191
Target:  5'- cUCGCUGCCGUGGAUGaccGCcucGAUGAu -3'
miRNA:   3'- cAGCGGCGGCACUUGCa--CGac-UUGCU- -5'
23747 5' -55.3 NC_005261.1 + 55165 0.66 0.919191
Target:  5'- -gCGCCGCCGccGGCGgcucGCgGGGCGGa -3'
miRNA:   3'- caGCGGCGGCacUUGCa---CGaCUUGCU- -5'
23747 5' -55.3 NC_005261.1 + 114571 0.66 0.913373
Target:  5'- -cCGCCGCCG-GAucGCGUucgcaaGCUGuuccGCGAg -3'
miRNA:   3'- caGCGGCGGCaCU--UGCA------CGACu---UGCU- -5'
23747 5' -55.3 NC_005261.1 + 43448 0.66 0.913373
Target:  5'- cUCGgCGCC-UGGACGUcGCcGGGCGGg -3'
miRNA:   3'- cAGCgGCGGcACUUGCA-CGaCUUGCU- -5'
23747 5' -55.3 NC_005261.1 + 22683 0.66 0.913373
Target:  5'- -gUGCCGCCGggGGACGgGCccGGCGAc -3'
miRNA:   3'- caGCGGCGGCa-CUUGCaCGacUUGCU- -5'
23747 5' -55.3 NC_005261.1 + 58729 0.66 0.907316
Target:  5'- -cCGCCGCCGcgcaGAGCGcGCUGuuaaGAa -3'
miRNA:   3'- caGCGGCGGCa---CUUGCaCGACuug-CU- -5'
23747 5' -55.3 NC_005261.1 + 95626 0.66 0.907316
Target:  5'- -gCGCgGUCcagGAGCG-GCUGGGCGAg -3'
miRNA:   3'- caGCGgCGGca-CUUGCaCGACUUGCU- -5'
23747 5' -55.3 NC_005261.1 + 75518 0.66 0.907316
Target:  5'- -gCGCaCGCCGUGGucgcCGcGCUGcAGCGGc -3'
miRNA:   3'- caGCG-GCGGCACUu---GCaCGAC-UUGCU- -5'
23747 5' -55.3 NC_005261.1 + 51785 0.66 0.907316
Target:  5'- cGUCGCCcugcugGCCGUGGccaugcuCGUGCUGcGGCu- -3'
miRNA:   3'- -CAGCGG------CGGCACUu------GCACGAC-UUGcu -5'
23747 5' -55.3 NC_005261.1 + 75875 0.66 0.901019
Target:  5'- -aCGgCGCCGUGGGCGcGCgcagcGGCGAc -3'
miRNA:   3'- caGCgGCGGCACUUGCaCGac---UUGCU- -5'
23747 5' -55.3 NC_005261.1 + 49628 0.66 0.901019
Target:  5'- cUCGCCGUCGacgagcGAGCGgaUGCgcccGAGCGAc -3'
miRNA:   3'- cAGCGGCGGCa-----CUUGC--ACGa---CUUGCU- -5'
23747 5' -55.3 NC_005261.1 + 32278 0.66 0.901019
Target:  5'- -gCGCCGCCGcUG---GUGCUGGagGCGGg -3'
miRNA:   3'- caGCGGCGGC-ACuugCACGACU--UGCU- -5'
23747 5' -55.3 NC_005261.1 + 37847 0.67 0.890456
Target:  5'- uUCGCCGCCGacuucggcguccccGAcgccuggcggcGCGUGCUGGAgccCGAg -3'
miRNA:   3'- cAGCGGCGGCa-------------CU-----------UGCACGACUU---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.