miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 27320 0.66 0.98408
Target:  5'- gCGCGCGgGUCAagGGgGcGGAACGGgGg -3'
miRNA:   3'- -GUGCGCgCAGUagUCgC-UCUUGUUgC- -5'
23748 3' -52.2 NC_005261.1 + 84699 0.66 0.98408
Target:  5'- gGCGCGCGgg--CAcGCGAGcACAaaGCGg -3'
miRNA:   3'- gUGCGCGCaguaGU-CGCUCuUGU--UGC- -5'
23748 3' -52.2 NC_005261.1 + 43819 0.66 0.98408
Target:  5'- gGCGCGCccuccGUgGagaagcugcUCGGCGAGGGCGAgGa -3'
miRNA:   3'- gUGCGCG-----CAgU---------AGUCGCUCUUGUUgC- -5'
23748 3' -52.2 NC_005261.1 + 52596 0.66 0.98408
Target:  5'- aCAgGCGUGgcgAUCAGCagaacGGGGACGGCGc -3'
miRNA:   3'- -GUgCGCGCag-UAGUCG-----CUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 115274 0.66 0.98408
Target:  5'- -cCGCGCGUCugggacGCGGGcAGCAGCc -3'
miRNA:   3'- guGCGCGCAGuagu--CGCUC-UUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 82043 0.66 0.982918
Target:  5'- aCugGUGCGUCAgc-GCGGGccacgucgccgggucGACGGCGu -3'
miRNA:   3'- -GugCGCGCAGUaguCGCUC---------------UUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 98293 0.66 0.982109
Target:  5'- --gGCGCGUCcgCGGCcucGGGGGCGgGCGc -3'
miRNA:   3'- gugCGCGCAGuaGUCG---CUCUUGU-UGC- -5'
23748 3' -52.2 NC_005261.1 + 33903 0.66 0.982109
Target:  5'- gGCGCGCGUauaaAGCG-GGGCcGCGu -3'
miRNA:   3'- gUGCGCGCAguagUCGCuCUUGuUGC- -5'
23748 3' -52.2 NC_005261.1 + 131618 0.66 0.982109
Target:  5'- gUACGCGCGcCuggCGcccgccGCGAGGAcCGACGg -3'
miRNA:   3'- -GUGCGCGCaGua-GU------CGCUCUU-GUUGC- -5'
23748 3' -52.2 NC_005261.1 + 101223 0.66 0.982109
Target:  5'- cCGCaGCGCGUCGagguggcgccUCAGCucGcGCAGCGc -3'
miRNA:   3'- -GUG-CGCGCAGU----------AGUCGcuCuUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 7205 0.66 0.982109
Target:  5'- gCGCGUGCGUgG-CAGCGGuGAGUAGCu -3'
miRNA:   3'- -GUGCGCGCAgUaGUCGCU-CUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 70486 0.66 0.980842
Target:  5'- gCGCGCGCGUgAgcacguagcuggcguUCGGCGccacgGGGACGAUc -3'
miRNA:   3'- -GUGCGCGCAgU---------------AGUCGC-----UCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 31438 0.66 0.979961
Target:  5'- gCugGCgGCGcCGccCGGCGAGGACgAGCGc -3'
miRNA:   3'- -GugCG-CGCaGUa-GUCGCUCUUG-UUGC- -5'
23748 3' -52.2 NC_005261.1 + 11295 0.66 0.979961
Target:  5'- -uCGCGCGUCGcaggggaGGUGGGGAgGAUGg -3'
miRNA:   3'- guGCGCGCAGUag-----UCGCUCUUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 68684 0.66 0.979961
Target:  5'- cCGC-CGCGUgGgggcCGGCGcGGACGACGg -3'
miRNA:   3'- -GUGcGCGCAgUa---GUCGCuCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 136060 0.66 0.979961
Target:  5'- gGCGgGCGgg--CAGgGAGAACAaagGCGa -3'
miRNA:   3'- gUGCgCGCaguaGUCgCUCUUGU---UGC- -5'
23748 3' -52.2 NC_005261.1 + 21764 0.66 0.979961
Target:  5'- aGCGCGCGcCG--GGCGAGccgccGCGGCGc -3'
miRNA:   3'- gUGCGCGCaGUagUCGCUCu----UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 55208 0.66 0.979961
Target:  5'- --aGCGCGgauccggCGgcccgaggCGGCGAGGGCGGCa -3'
miRNA:   3'- gugCGCGCa------GUa-------GUCGCUCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 137755 0.66 0.979961
Target:  5'- gGCGCGCG-CGggGGCGGGGu--GCGg -3'
miRNA:   3'- gUGCGCGCaGUagUCGCUCUuguUGC- -5'
23748 3' -52.2 NC_005261.1 + 72 0.66 0.979961
Target:  5'- gGCGCGCG-CGggGGCGGGGu--GCGg -3'
miRNA:   3'- gUGCGCGCaGUagUCGCUCUuguUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.