miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23748 3' -52.2 NC_005261.1 + 136060 0.66 0.979961
Target:  5'- gGCGgGCGgg--CAGgGAGAACAaagGCGa -3'
miRNA:   3'- gUGCgCGCaguaGUCgCUCUUGU---UGC- -5'
23748 3' -52.2 NC_005261.1 + 100735 0.66 0.979961
Target:  5'- gCGCGCGCG-CG-CGGCGGcGcGCGGCa -3'
miRNA:   3'- -GUGCGCGCaGUaGUCGCU-CuUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 137755 0.66 0.979961
Target:  5'- gGCGCGCG-CGggGGCGGGGu--GCGg -3'
miRNA:   3'- gUGCGCGCaGUagUCGCUCUuguUGC- -5'
23748 3' -52.2 NC_005261.1 + 21695 0.66 0.975097
Target:  5'- --aGCGCGUCGcgGGCGAGcGCuucACGg -3'
miRNA:   3'- gugCGCGCAGUagUCGCUCuUGu--UGC- -5'
23748 3' -52.2 NC_005261.1 + 115274 0.66 0.98408
Target:  5'- -cCGCGCGUCugggacGCGGGcAGCAGCc -3'
miRNA:   3'- guGCGCGCAGuagu--CGCUC-UUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 11295 0.66 0.979961
Target:  5'- -uCGCGCGUCGcaggggaGGUGGGGAgGAUGg -3'
miRNA:   3'- guGCGCGCAGUag-----UCGCUCUUgUUGC- -5'
23748 3' -52.2 NC_005261.1 + 93764 0.66 0.977626
Target:  5'- cCGCGCGCG-CG-CGGCGuc-GCAGCa -3'
miRNA:   3'- -GUGCGCGCaGUaGUCGCucuUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 31438 0.66 0.979961
Target:  5'- gCugGCgGCGcCGccCGGCGAGGACgAGCGc -3'
miRNA:   3'- -GugCG-CGCaGUa-GUCGCUCUUG-UUGC- -5'
23748 3' -52.2 NC_005261.1 + 21764 0.66 0.979961
Target:  5'- aGCGCGCGcCG--GGCGAGccgccGCGGCGc -3'
miRNA:   3'- gUGCGCGCaGUagUCGCUCu----UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 81426 0.66 0.975097
Target:  5'- aCAgGCgGCGUCGUCGGCcgccccGCGGCGg -3'
miRNA:   3'- -GUgCG-CGCAGUAGUCGcucu--UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 69420 0.66 0.977626
Target:  5'- aCACGCGcCGgcgCAUCAcgGAGAcggGCAGCGc -3'
miRNA:   3'- -GUGCGC-GCa--GUAGUcgCUCU---UGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 55208 0.66 0.979961
Target:  5'- --aGCGCGgauccggCGgcccgaggCGGCGAGGGCGGCa -3'
miRNA:   3'- gugCGCGCa------GUa-------GUCGCUCUUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 66029 0.66 0.977626
Target:  5'- --gGCGCGUCguaGUCGGCGGccACGGCc -3'
miRNA:   3'- gugCGCGCAG---UAGUCGCUcuUGUUGc -5'
23748 3' -52.2 NC_005261.1 + 18838 0.66 0.977626
Target:  5'- uCGCGCucGUGUCcaCAGCGuGGAGCGugGa -3'
miRNA:   3'- -GUGCG--CGCAGuaGUCGC-UCUUGUugC- -5'
23748 3' -52.2 NC_005261.1 + 86092 0.66 0.977626
Target:  5'- -cCGCGCGuucUCGUCGGCGcccGGGCGuCGg -3'
miRNA:   3'- guGCGCGC---AGUAGUCGCu--CUUGUuGC- -5'
23748 3' -52.2 NC_005261.1 + 72 0.66 0.979961
Target:  5'- gGCGCGCG-CGggGGCGGGGu--GCGg -3'
miRNA:   3'- gUGCGCGCaGUagUCGCUCUuguUGC- -5'
23748 3' -52.2 NC_005261.1 + 52969 0.66 0.974833
Target:  5'- cCGCGCcggugcgGCGcCGgcaGGCGGGGGCGGCGc -3'
miRNA:   3'- -GUGCG-------CGCaGUag-UCGCUCUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 93541 0.66 0.977626
Target:  5'- cCGCGCGCGcCGcccagUAGCGGucGACGGCGg -3'
miRNA:   3'- -GUGCGCGCaGUa----GUCGCUc-UUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 60045 0.66 0.979961
Target:  5'- gGCGC-CGaCGgcggCGGCGAaGAGCGGCGg -3'
miRNA:   3'- gUGCGcGCaGUa---GUCGCU-CUUGUUGC- -5'
23748 3' -52.2 NC_005261.1 + 83304 0.66 0.975097
Target:  5'- uGCGCgGgGUCGUgCAGCucGGGCGGCGc -3'
miRNA:   3'- gUGCG-CgCAGUA-GUCGcuCUUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.