Results 21 - 40 of 154 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 7205 | 0.66 | 0.982109 |
Target: 5'- gCGCGUGCGUgG-CAGCGGuGAGUAGCu -3' miRNA: 3'- -GUGCGCGCAgUaGUCGCU-CUUGUUGc -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 81426 | 0.66 | 0.975097 |
Target: 5'- aCAgGCgGCGUCGUCGGCcgccccGCGGCGg -3' miRNA: 3'- -GUgCG-CGCAGUAGUCGcucu--UGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 52596 | 0.66 | 0.98408 |
Target: 5'- aCAgGCGUGgcgAUCAGCagaacGGGGACGGCGc -3' miRNA: 3'- -GUgCGCGCag-UAGUCG-----CUCUUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 52969 | 0.66 | 0.974833 |
Target: 5'- cCGCGCcggugcgGCGcCGgcaGGCGGGGGCGGCGc -3' miRNA: 3'- -GUGCG-------CGCaGUag-UCGCUCUUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 105950 | 0.66 | 0.979961 |
Target: 5'- aGCGCGcCGUCGauggccUCGGCGcccAGcGCGGCGu -3' miRNA: 3'- gUGCGC-GCAGU------AGUCGC---UCuUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 21695 | 0.66 | 0.975097 |
Target: 5'- --aGCGCGUCGcgGGCGAGcGCuucACGg -3' miRNA: 3'- gugCGCGCAGUagUCGCUCuUGu--UGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 55208 | 0.66 | 0.979961 |
Target: 5'- --aGCGCGgauccggCGgcccgaggCGGCGAGGGCGGCa -3' miRNA: 3'- gugCGCGCa------GUa-------GUCGCUCUUGUUGc -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 60240 | 0.66 | 0.975097 |
Target: 5'- gGC-CGCcuccgCcgCGGCGGGAGCGGCGg -3' miRNA: 3'- gUGcGCGca---GuaGUCGCUCUUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 18838 | 0.66 | 0.977626 |
Target: 5'- uCGCGCucGUGUCcaCAGCGuGGAGCGugGa -3' miRNA: 3'- -GUGCG--CGCAGuaGUCGC-UCUUGUugC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 115274 | 0.66 | 0.98408 |
Target: 5'- -cCGCGCGUCugggacGCGGGcAGCAGCc -3' miRNA: 3'- guGCGCGCAGuagu--CGCUC-UUGUUGc -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 60045 | 0.66 | 0.979961 |
Target: 5'- gGCGC-CGaCGgcggCGGCGAaGAGCGGCGg -3' miRNA: 3'- gUGCGcGCaGUa---GUCGCU-CUUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 43819 | 0.66 | 0.98408 |
Target: 5'- gGCGCGCccuccGUgGagaagcugcUCGGCGAGGGCGAgGa -3' miRNA: 3'- gUGCGCG-----CAgU---------AGUCGCUCUUGUUgC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 93764 | 0.66 | 0.977626 |
Target: 5'- cCGCGCGCG-CG-CGGCGuc-GCAGCa -3' miRNA: 3'- -GUGCGCGCaGUaGUCGCucuUGUUGc -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 86092 | 0.66 | 0.977626 |
Target: 5'- -cCGCGCGuucUCGUCGGCGcccGGGCGuCGg -3' miRNA: 3'- guGCGCGC---AGUAGUCGCu--CUUGUuGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 107530 | 0.67 | 0.972081 |
Target: 5'- gGCaGCGCGUCggCGGCcaccagcacguccGAGAgcacgGCAGCGg -3' miRNA: 3'- gUG-CGCGCAGuaGUCG-------------CUCU-----UGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 71345 | 0.67 | 0.962885 |
Target: 5'- --aGCGCGUCcUCGGUGAGcgccGAgAGCGc -3' miRNA: 3'- gugCGCGCAGuAGUCGCUC----UUgUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 59772 | 0.67 | 0.966266 |
Target: 5'- cCAUGUGC-UCGgccgCAGCGAcGGCGGCGg -3' miRNA: 3'- -GUGCGCGcAGUa---GUCGCUcUUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 79821 | 0.67 | 0.966266 |
Target: 5'- uGCGCGCGgCGgcgCGGCGgccAGcGCAGCGc -3' miRNA: 3'- gUGCGCGCaGUa--GUCGC---UCuUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 109842 | 0.67 | 0.969424 |
Target: 5'- uCugGCGUGcCGUUGGUggcggcuccuGGGGGCAGCGg -3' miRNA: 3'- -GugCGCGCaGUAGUCG----------CUCUUGUUGC- -5' |
|||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 72203 | 0.67 | 0.969424 |
Target: 5'- cCGCGCGCGg---CAGaaAGAACAugGu -3' miRNA: 3'- -GUGCGCGCaguaGUCgcUCUUGUugC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home