Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23748 | 3' | -52.2 | NC_005261.1 | + | 75391 | 0.74 | 0.670904 |
Target: 5'- gGCGCGCGcCAUCGaCGAGGGCG-CGg -3' miRNA: 3'- gUGCGCGCaGUAGUcGCUCUUGUuGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 4523 | 0.73 | 0.762487 |
Target: 5'- -cCGCGCGggcgCcgCGGCGAGGGCGcCGg -3' miRNA: 3'- guGCGCGCa---GuaGUCGCUCUUGUuGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 122650 | 0.73 | 0.742733 |
Target: 5'- gGCGCGCGUaCGUgGGCGcgaAGAGCAucACGu -3' miRNA: 3'- gUGCGCGCA-GUAgUCGC---UCUUGU--UGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 63792 | 0.73 | 0.742733 |
Target: 5'- gCGCGCGCGgcugCGUgAGCGuGAACccGACGc -3' miRNA: 3'- -GUGCGCGCa---GUAgUCGCuCUUG--UUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 59572 | 0.73 | 0.742733 |
Target: 5'- gCGCGCGCG-CcgCAGCGGGuGCcGCGc -3' miRNA: 3'- -GUGCGCGCaGuaGUCGCUCuUGuUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 12964 | 0.73 | 0.742733 |
Target: 5'- gGCGCGCG-CAccccagaCAGCGAGGGCcGCGa -3' miRNA: 3'- gUGCGCGCaGUa------GUCGCUCUUGuUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 3880 | 0.73 | 0.742733 |
Target: 5'- gCACgGCGCG-CAgcUCGGCGAGcGCGGCGc -3' miRNA: 3'- -GUG-CGCGCaGU--AGUCGCUCuUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 101304 | 0.72 | 0.818506 |
Target: 5'- gAUGCGCGcCGUUAGCGGGuGCGAg- -3' miRNA: 3'- gUGCGCGCaGUAGUCGCUCuUGUUgc -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 50997 | 0.72 | 0.809563 |
Target: 5'- gGCgGCGCGUgGgcgCGGCGGGAGCucGGCGa -3' miRNA: 3'- gUG-CGCGCAgUa--GUCGCUCUUG--UUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 94633 | 0.72 | 0.800451 |
Target: 5'- gGCGC-CGUCGUCGGCGcgcgcGAACAuGCGg -3' miRNA: 3'- gUGCGcGCAGUAGUCGCu----CUUGU-UGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 135257 | 0.72 | 0.800451 |
Target: 5'- gGCGCGCGgauggaCAUCAuGCGgccugugcAGAACGGCGg -3' miRNA: 3'- gUGCGCGCa-----GUAGU-CGC--------UCUUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 136478 | 0.72 | 0.791177 |
Target: 5'- uCGCGCGCGggCAgCAGCGAGcagcuCGGCGc -3' miRNA: 3'- -GUGCGCGCa-GUaGUCGCUCuu---GUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 104074 | 0.72 | 0.791177 |
Target: 5'- --aGCGCGUCcagcUCGGCGgacAGGGCGGCGg -3' miRNA: 3'- gugCGCGCAGu---AGUCGC---UCUUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 127659 | 0.72 | 0.781752 |
Target: 5'- gGCGCGCGgguUCggGGCGGGAcgGCGGCGg -3' miRNA: 3'- gUGCGCGCaguAG--UCGCUCU--UGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 39352 | 0.72 | 0.781752 |
Target: 5'- uGCGCGCGgcggcagccgccUCAUCGGCGgccgGGGAgGGCGg -3' miRNA: 3'- gUGCGCGC------------AGUAGUCGC----UCUUgUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 43592 | 0.72 | 0.772185 |
Target: 5'- uGCGCGaCGcCGUCuccGGCGAGGAgGGCGa -3' miRNA: 3'- gUGCGC-GCaGUAG---UCGCUCUUgUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 1400 | 0.72 | 0.772185 |
Target: 5'- gGCGcCGCGgccgCGgcggCGGCGGGGGCGGCGc -3' miRNA: 3'- gUGC-GCGCa---GUa---GUCGCUCUUGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 54896 | 0.71 | 0.82727 |
Target: 5'- gCGCGCGCGUgCcgCAGCGcGcgUAGCGa -3' miRNA: 3'- -GUGCGCGCA-GuaGUCGCuCuuGUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 14186 | 0.71 | 0.835847 |
Target: 5'- gGCGCGgGUCAggccCAGgGAGGAaGACGg -3' miRNA: 3'- gUGCGCgCAGUa---GUCgCUCUUgUUGC- -5' |
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23748 | 3' | -52.2 | NC_005261.1 | + | 105260 | 0.71 | 0.835847 |
Target: 5'- -cCGCGCGaCAggcUCGGCGGGcGGCAGCGc -3' miRNA: 3'- guGCGCGCaGU---AGUCGCUC-UUGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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